G56946


Basic Information

Item Value
gene id G56946
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 8863066 ~ 8869192 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU64839
TGTTTGCGACAGGAATACTTCATTTATTGCCTGATTAATATCTCATATAGGAAAAAATTACCTCCAATGCATATCTGTGACATTTGACACTTTTTGGTGCAGTCAGATCTAATAGGACAGGACTGAGGTTAGCAGCACTGACCACATTACTCTAAGAAGTTATTTACGTCCATAAACTGGGGTACATTGCAATGAAATATTACAACACAAAATCCAGAGGAAATTCTTCTTTGGACAGCTTCTACAAAGTTATAAGTGCTCATTTGGTAGTACATAGGAACAGATGTTTTCCCTGCTTTAGGTTTTTTATGATGCCTAAAATGTTCTGAGGTGCTTTTAAATAGGGGAGAATAGAATGCATCATCATTAATACACGTCGCTCACTCAGTTCAGTGGTACATATTGTGAATATTAGTGAAGTGCAAAATATCTCCCTTCAGTTCATATCCCATTAATTCTCCCAGTGGACTTTTAGAAGGAATCCTGATAGGAGAAGGAATGCATGCAGATGAAATGGCTTCTGAAATCACATGACTGTGCAGGTTTTTGTCTTGGTCTTGTGTAGGCGTGACACCGAGTCCAACTCAGGTCTGTTAGATACGTGTGACGTCCTCTTGGTGGCTCTGCTGGACTTCATGCGCTTCACATTCTTGTTGCTTTTACTGATGCAGGCCAATGTGGCTATGTGAAAAATGTCCCTCACACTGTTCTCAGACTGCTGCGCTGAGCACTCGATGTAAGGGGCCGAGATCTGCTTGGCCATGTTTGAACCTGGTCATACGATGAAGGAATGTCATTGGACAGCTGCACAAATGTGGCCAGATCTGCACGTAAGTCTGACTTGCATCCAACCAAAAGTACTTTAGTATTGGGACAGAACTCCTCAATTTCCCCCTTCCCTTCCTTAGCACATTCTCCAGAGTCTCTGGTCGACCGATATCAAAACAGATGAGAACTGCATCAGCGTCCGGATAAGAGAGGGGGCGCACGTTGTCATAGTGAGCTCAACTCTCAAAGTGTCCACCTCAAAACTGGCTGTGTAGTTCTCAAACACTGTAGGAACATAGTTCTGCGAGAGAAAGATCCAAAGTTTGATGTTTAACTAAACAAAATGACTAACTCACGGCTAAAACGCTACATCACTTTTGCACCAATAACACAAATGACATTAAAAAACAAATTAATATTCTTATTTAGAGGCGACTTTTCTCTACAAACCTCTGGAAATGAGTCTTTGGCAAAAACATTTAATAAAGACGTCTTCCCACACTGAGTGTCCCCGACCACAACTATTTTACATTTCATATCGTGATGGTGATCCATCATGGACTAACTGAACCTCATCTTCATTCACTGTCGCTGAACATCAACCCGGTGACCTCGAGACTGCAGTCTGTCCATGATGTTACAGTAAGAGAGAAAGATTCCAGGACTCAAATTACTTTCGGTGCTCCTCAGGTTGTGATAAAGATGAGTTATTTGTAACGCTAAATCTCTGTAAAAGGCGAGAGGCGCATCCTCTGGGTGCTGCGCTGAGAAATAAACCGCTTCGACCGTCTCGCTTT
>TU64840
GAATGTGTTTGCATATAATGACATAAGTTTACTACTTCAACTGTTTGCGACAGGAATACTTCATTTATTGCCTGATTAATATCTCATATAGGAAAAAATTACCTCCAATGCATATCTGTGACATTTGACACTTTTTGGTGCAGTCAGATCTAATAGGACAGGACTGAGGTTAGCAGCACTGACCACATTACTCTAAGAAGTTATTTACGTCCATAAACTGGGGTACATTGCAATGAAATATTACAACACAAAATCCAGAGGAAATTCTTCTTTGGACAGCTTCTACAAAGTTATAAGTGCTCATTTGGTAGTACATAGGAACAGATGTTTTCCCTGCTTTAGGTTTTTTATGATGCCTAAAATGTTCTGAGGTGCTTTTAAATAGGGGAGAATAGAATGCATCATCATTAATACACGTCGCTCACTCAGTTCAGTGGTACATATTGTGAATATTAGTGAAGTGCAAAATATCTCCCTTCAGTTCATATCCCATTAATTCTCCCAGTGGACTTTTAGAAGGAATCCTGATAGGAGAAGGAATGCATGCAGATGAAATGGCTTCTGAAATCACATGACTGTGCAGGTTTTTGTCTTGGTCTTGTGTAGGCGTGACACCGAGTCCAACTCAGGTCTGTTAGATACGTGTGACGTCCTCTTGGTGGCTCTGCTGGACTTCATGCGCTTCACATTCTTGTTGCTTTTACTGATGCAGGCCAATGTGGCTATGTGAAAGCACGTAAGTCTGACTTGCATCCAACCAAAAGTACTTTAGTATTGGGACAGAACTCCTCAATTTCCCCCTTCCACTAAAGGATTTAAAAACATGGTGTTACACTGATGACACACATAATATATATAATACACATAATATTTTACATTATATATATATATATATCATTTACTAAAACTATTAAAAGAGGTTTTTTATAATAAAACATAATCAAAATAAATATTAAATGAAAAACTTAAAAATTAGAAATGTTGGCAACTAACTTAAATAAAATAAGTTGAAGTTGAAGTACTAGAAGTACTAAAACTGAAATAAAAAATAAATGAATACATTGATACGACTGTCTAGGGCTAGCCGTAACATAAATGAATGTGTGCTCACTCGAAAATAAATTTTTAACAAAGGTAAATTTATTAACAATATATAATGAAAATCATAAACAAAGGGATTAAATTCAGGAGTGGACCAGGCCAAAATAACAAACAAAAACAACTAATTTAAGTACCCTCTAAATTCCCTAAAAAATAAAAAAAAAACATAAAAAGAAAATTACAAAGCAACTTCCGTAACTCCCTTAACCCAAAACACAGAATAAAGATATATGCAAAAAGAAACGGCGTCACACTCCCTACTTCCCTGAAAGTATACAAATAATATTTACATAATGTAACTGAAAGCAAAAGCAATACTGAAAATTATAACTCGAACTGCTCGAAATACTAATAAAAGCACACAAAAATTACTAAAATTAAAATAAAAAATTGAATATATATATATATATATATATGAAATATTACAAAATGTATTAATTATTTTAACATTTATTGTAATATGATTAATATAAATATTATCATAATATCTGTAAAACTACAAAAACTAAGAAAACAAAACCTAAAATTCCTTTGAAAGACAAGAATATAATATTATTAATTTTAAGTAATCTTCTAGCTGTCTAATATTGGATTTAGCTGTGAGTGTAAGATTTCAAGAGTGTAATTGGCCCCACAAATTCCTTTCTACATTGTTTATATGACATCCAGCTATTCTATACCATGTTTGTTATCTCAGGACCCCTAAAAATCTGTGATTGCATGATAGCTCTTCATGACTCCATGACATGACCAATTATTAAAACACTTTAGTTTTAAGTATCATGCCACCTTCTAGTCAGTGGAGGACCCCAACATGGGTGACATGGTAAAGCGTAATGTTCTCTAGTAGTTCACCTCGAATCACCCAATGACATCAGTGTAGAGTTGCACAGACCACCTCGCTTAGAGAGACTATAGTCAGTGACACCATTGGAGACCGAAGCGGCCCAAAACGTGTGGCTAATTCTTGCTCTCTCAAAACCTCTTGTCTCAAAATGACATCAGAGGTTACAAGGCATTCTGTGACACAAAGGCTCTATGATTCTGAGACCCAACGTAAACAAGCTCTTATTGGTTGTCGTTCTCCCCCTCATGTGATAGTCAAAGGATCAAAGTCCTCCCACACATTCCCTCTCTCATTCATTGGACTCTTCTCTCAGATGTCTGGACTTTTGTTCTCATCGTCACAAAGACAGGGCTTGTGAAAATATCCCAACCACAATTCAGGAGAGCTACAACAGTTTATAAACATTCAGCATTGATAAACAAATGTCTTTAAATCAGCTTACCTTCCTTAGCACATTCTCCAGAGTCTCTGGTCGACCGATATCAAAACAGATGAGAACTGCATCAGCGTCCGGATAAGAGAGGGGGCGCACGTTGTCATAGTATGGAGACCCTGCAAATAGACACAAAAACACTGTATTAATAAATAATTACTTAATATAAATGAATAAATAATAATCTGAACAATAACCTGACAGTGCAATGGAAAAACTGATAAGTTAAACAATGAACACA
>TU64838
TGTTTGCGACAGGAATACTTCATTTATTGCCTGATTAATATCTCATATAGGAAAAAATTACCTCCAATGCATATCTGTGACATTTGACACTTTTTGGTGCAGTCAGATCTAATAGGACAGGACTGAGGTTAGCAGCACTGACCACATTACTCTAAGAAGTTATTTACGTCCATAAACTGGGGTACATTGCAATGAAATATTACAACACAAAATCCAGAGGAAATTCTTCTTTGGACAGCTTCTACAAAGTTATAAGTGCTCATTTGGTAGTACATAGGAACAGATGTTTTCCCTGCTTTAGGTTTTTTATGATGCCTAAAATGTTCTGAGGTGCTTTTAAATAGGGGAGAATAGAATGCATCATCATTAATACACGTCGCTCACTCAGTTCAGTGGTACATATTGTGAATATTAGTGAAGTGCAAAATATCTCCCTTCAGTTCATATCCCATTAATTCTCCCAGTGGACTTTTAGAAGGAATCCTGATAGGAGAAGGAATGCATGCAGATGAAATGGCTTCTGAAATCACATGACTGTGCAGGTTTTTGTCTTGGTCTTGTGTAGGCGTGACACCGAGTCCAACTCAGGTCTGTTAGATACGTGTGACGTCCTCTTGGTGGCTCTGCTGGACTTCATGCGCTTCACATTCTTGTTGCTTTTACTGATGCAGGCCAATGTGGCTATGTGAAAAATGTCCCTCACACTGTTCTCAGACTGCTGCGCTGAGCACTCGATGTAAGGGGCCGAGATCTGCTTGGCCATGTTTGAACCTGGTCATACGATGAAGGAATGTCATTGGACAGCTGCACAAATGTGGCCAGATCTGCACGTAAGTCTGACTTGCATCCAACCAAAAGTACTTTAGTATTGGGACAGAACTCCTCAATTTCCCCCTTCCACTAAAGGATTTAAAAACATGGTGTTACACTGATGACACACATAATATATATAATACACATAATATTTTACATTATATATATATATATATCATTTACTAAAACTATTAAAAGAGGTTTTTTATAATAAAACATAATCAAAATAAATATTAAATGAAAAACTTAAAAATTAGAAATGTTGGCAACTAACTTAAATAAAATAAGTTGAAGTTGAAGTACTAGAAGTACTAAAACTGAAATAAAAAATAAATGAATACATTGATACGACTGTCTAGGGCTAGCCGTAACATAAATGAATGTGTGCTCACTCGAAAATAAATTTTTAACAAAGGTAAATTTATTAACAATATATAATGAAAATCATAAACAAAGGGATTAAATTCAGGAGTGGACCAGGCCAAAATAACAAACAAAAACAACTAATTTAAGTACCCTCTAAATTCCCTAAAAAATAAAAAAAAAACATAAAAAGAAAATTACAAAGCAACTTCCGTAACTCCCTTAACCCAAAACACAGAATAAAGATATATGCAAAAAGAAACGGCGTCACACTCCCTACTTCCCTGAAAGTATACAAATAATATTTACATAATGTAACTGAAAGCAAAAGCAATACTGAAAATTATAACTCGAACTGCTCGAAATACTAATAAAAGCACACAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU64839 False 1565 lncRNA 0.42 4 8863066 8869151
TU64840 False 2622 lncRNA 0.34 2 8865473 8869192
TU64838 True 1562 lncRNA 0.35 2 8866627 8869151

Neighbor

gene id symbol gene type direction distance location
CI01000009_08858198_08860555 NA coding downstream 2511 8856310 ~ 8860563 (-)
CI01000009_08842201_08845751 MMADHC coding downstream 17315 8842111 ~ 8845751 (-)
CI01000009_08739549_08745500 NA coding downstream 117566 8739549 ~ 8745500 (-)
CI01000009_08737485_08739374 MAP3K19 coding downstream 123692 8737253 ~ 8739374 (-)
CI01000009_08718943_08719773 NA coding downstream 140972 8718807 ~ 8722094 (-)
CI01000009_08870258_08879256 NA coding upstream 1007 8870199 ~ 8879256 (-)
CI01000009_08882412_08884827 EAF2 coding upstream 12324 8881516 ~ 8885373 (-)
CI01000009_08930289_08935481 TSN coding upstream 60728 8929920 ~ 8935790 (-)
CI01000009_08950933_08951298 NA coding upstream 81543 8950735 ~ 8952869 (-)
CI01000009_09014504_09031053 RIF1 coding upstream 145035 9014227 ~ 9031053 (-)
G56977 NA non-coding downstream 1874 8823621 ~ 8861192 (-)
G56943 NA non-coding downstream 88664 8769318 ~ 8774402 (-)
G56942 NA non-coding downstream 94141 8767411 ~ 8768925 (-)
G56940 NA non-coding downstream 96789 8759641 ~ 8766277 (-)
G56986 NA non-coding upstream 16232 8885424 ~ 8885706 (-)
G56988 NA non-coding upstream 26960 8896152 ~ 8896374 (-)
G56997 NA non-coding upstream 53502 8922694 ~ 8922966 (-)
G56999 NA non-coding upstream 55395 8924587 ~ 8924828 (-)
G57053 NA non-coding upstream 79664 8948856 ~ 8949181 (-)
G55814 NA other downstream 435054 8425821 ~ 8428012 (-)
G53515 NA other downstream 3357818 5502395 ~ 5505248 (-)
G52828 NA other downstream 4631597 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 5601109 3261038 ~ 3262843 (-)
G59097 NA other upstream 3419025 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 5106196 13975099 ~ 13978614 (-)
G59490 NA other upstream 5164372 14033564 ~ 14037873 (-)
G59811 NA other upstream 5993205 14862397 ~ 14887464 (-)
G59941 NA other upstream 6262912 15132104 ~ 15132503 (-)

Expression


Co-expression Network