LOC111194854


Basic Information

Item Value
gene id LOC111194854
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1880148 ~ 1882693 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679996.1
TGCTGTTCCGGACGCTGGTGTATTCACTGCTGTAGAGTTGGTGTAGAATGGCTGAGGGCGGTCTCTCAGTGGACCAGTTCAGCTGTCCAGTATGTCTGGACCTCCTGAAGGAACCAGTGGCCATTCCATGTGGACACAGCTTCTGTAAGGTGTGTATTAATGACTGCTGGGATCAGGAGGATCTGAAGGGTGTGTACAGCTGCCCTCAGTGCAGACGCTCCTTCAGACCGAGGCCTGTGGTGGGTAAGAACACCATGCTGGCTGAAGTGGTGGAGAAGCTGAGGAAAACTGAGCTCCAGGATGCTGGTCCTGCTCCTTGTCCTGCTGGACCCGGAGACGTGGAGTGTGATTTCTGCACTGGGAGAAAACTTGCAGCCGTGAAGTCCTGCCTGGTGTGTCTGGTCTCTTTCTGTGAGAATCACCTCCAGCCTCATTATACAGTTCCTGCCCTGAAGAATCACAAGTTGATCAAAGCCTCCAGATACCTGCAGGAGCAGATCTGCTCTCAACATGATAAACGCCTGGAGGTTTACTGTCGCACTGATCAGCAGTGTATCTGCATGCTGTGCACCATGGATCAACATAAAGGACACGATACAGTATCCGCTACAGCTGAAAGAGCTGAGCAGCAGAAGCTGTTGCTGAACACAAAGGAGGAAAACCAGCGAAAAAtccaggagaaagagaaagagcttAACAAGCTGAGAAATGCAGAGGAGTCTCACAAGCGCTCTGCTCAGGCAGCAGTGAGGGACACTGAGAAGATCTTTACAGAGCTGATCCGCTGTATTGAGATGAAACGCTCGGAGGTCTCAGAGCTGATCAGAGATCAGGAGAAAGCTGCAGTGAGTCGAGCTGAAGGAGTCCAGaagcagctggaggaggagatCGCTGAACTAAGGAGGAGAAACACTGAGCTGGAGGAGCTTTCACACACCGAGGACCACATCCATTTCCTTCAGGTACTAGAACCCTTTTAATTCAATCACTTTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679996.1 True 995 mRNA 0.51 3 1880148 1882693

Neighbor

gene id symbol gene type direction distance location
nup35 nup35,LOC106582498,LOC107749876 coding upstream 1293 1870486 ~ 1878855 (+)
ehhadh NA coding upstream 57928 1806395 ~ 1822220 (+)
LOC103028997 NA coding upstream 83401 1783878 ~ 1796747 (+)
LOC103029311 NA coding upstream 97107 1775451 ~ 1783041 (+)
LOC103030276 LOC103030276 coding upstream 155196 1719292 ~ 1724952 (+)
znf804a znf804a coding downstream 210656 2093349 ~ 2191914 (+)
LOC103024889 nxph2,LOC108413064 coding downstream 557963 2440656 ~ 2473897 (+)
kansl1l NA coding downstream 721365 2604058 ~ 2655714 (+)
map2 map2 coding downstream 777762 2660455 ~ 2875066 (+)
cps1 cps1 coding downstream 1029314 2912007 ~ 3011890 (+)
G164400 NA non-coding upstream 3063 1876444 ~ 1877085 (+)
G164376 NA non-coding upstream 171507 1706881 ~ 1708641 (+)
G164284 NA non-coding upstream 890635 989297 ~ 989513 (+)
G164282 NA non-coding upstream 927719 952065 ~ 952429 (+)
G164276 NA non-coding upstream 935274 944597 ~ 944874 (+)
G164404 NA non-coding downstream 20373 1903066 ~ 1906873 (+)
G164475 NA non-coding downstream 233150 2115843 ~ 2118502 (+)
G164479 NA non-coding downstream 296409 2179102 ~ 2180592 (+)
G164467 NA non-coding downstream 310122 2192815 ~ 2193188 (+)
G164498 NA non-coding downstream 344853 2227546 ~ 2227792 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 42061 1802787 ~ 1838087 (+)
tspear tspear other upstream 119588 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 383768 1404101 ~ 1496380 (+)
G164126 NA other upstream 1307955 538279 ~ 572193 (+)
nostrin nostrin other upstream 1705223 131108 ~ 174925 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 607351 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 3385346 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 4234671 6117364 ~ 6123051 (+)
G165406 NA other downstream 4262244 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 4277707 6160400 ~ 6237986 (+)

Expression


Co-expression Network