btla


Basic Information

Item Value
gene id btla
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5628989 ~ 5638938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679998.1
AGTGAAGACCTGACACTGTCACAGAGATTAACTCACAGTGACTTTGGAAACTCCAGAGTGAAGACGAACTGAAGATGATTTGATTATGAAATCATTTATAACTGCtcagttttgttattttatttatgatggATAAAGCACTTCTGGAAAGGATCTTGATgttaaataacttaattttggttCTTGTTCTCTTTGGATCTGCAGATGCGCAAGGTGGATGTGCTCCTGAAGTCAGAGGTCGAAAGAAcactgtagtttttacagtctCCAGTAAAAAACCTAATATCTCCTGTCCGGTGAGGTACTGTGAGAAGATACCAACAATTACGTGGTTTAAACTTAGTGCTTTAAACACCAGTTACCACCTACCTGTTAATGAAACAGACACAATCACCATTACACAGGAGCGATCGACTGCACACAAGAAGGAAATCATCTCATATCTGACATTTAAACGCATCTCTATTAGTGATGCTGGACTTTACAAATGTGCAGCTTCAGAATCTGGTTTCATATCAGAAAGCCACAGCATTAATGTTTCTGTTTCAGaaactgTCTCGCAGCGTGACAATAAAATGACCGCTTCTGCTGACTTAGAAAAACCAGGTGATTTTGGGTGGATGCCTTACATTATAATCTGCTCAGGTATCATCGGTCTGGTCACTGTGGTGTTGGTAATCTTTTTCCTGAGTGTAGATGGGTGTAAATgttcaaaaaaagataataacCAAAGAACACAGGTGCCCCCCAGCCCCAACGTTTCAAAGAGTGATGGACACTGCCGTGGAAAGGAAAAGTCAGAACGAAAGAATGTCTACAAATCATCCGCAGAGACACTACAGCTGGACATTCCCTCGAGTAGCTCAGCCAGGGATCAGCAGGAGAACACACCACAGCAGCAGATCGTTTACGCCACTCTGGACCATCTCGCACCCAGAGTTCCTCCTGCAGTGCACCATTTCTCCAGAGAACAGCACTCAGAATACGCAGCAATCCGCTATACTGAAACCGTCTGAGCGAACAGAGGAAAGAGGAACAGTGTTGGTTCCTGAAATGGTTCCTGACTGATATTGTAGGGACTTCTCCAATAGACTTCTCCAGAACTGTGAAGTAGGAAAGTACCAGAAAACATCACCAGCCTTCCTGGTACAGCATCCTTCTCCTAATATATGATTTACACCGGCACTGTGAACTGTGGACTATAaggaaatacaggggttggacaatgaaactgaaacacctggttttagatcacagTAATTTATTATCCCGACAAACAGTTCTGGTGTAAACAGgaaagttgaggtgcacattgaattctgcagtgatttgatcagccgtggttttatgttttttggatacatccC

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679998.1 True 1367 mRNA 0.42 6 5628989 5638938

Neighbor

gene id symbol gene type direction distance location
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 191757 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 323880 5300599 ~ 5305109 (+)
LOC111194874 NA coding upstream 395350 5219361 ~ 5233639 (+)
LOC111194953 NA coding upstream 614410 4996621 ~ 5014579 (+)
LOC103031000 NA coding upstream 634793 4973645 ~ 4994196 (+)
maats1 NA coding downstream 162953 5801891 ~ 5834662 (+)
nr1i2 NA coding downstream 196543 5835481 ~ 5862907 (+)
LOC103026554 LOC108423842 coding downstream 650612 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 657248 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 989668 6628606 ~ 6733187 (+)
G165229 NA non-coding upstream 43871 5583527 ~ 5585118 (+)
G165176 NA non-coding upstream 115696 5504741 ~ 5513293 (+)
G165159 NA non-coding upstream 295870 5332779 ~ 5333119 (+)
G165053 NA non-coding upstream 322546 5305742 ~ 5306443 (+)
G165034 NA non-coding upstream 511874 5116915 ~ 5117115 (+)
G165273 NA non-coding downstream 73742 5712680 ~ 5729989 (+)
G165276 NA non-coding downstream 80107 5719045 ~ 5719974 (+)
LOC111194877 NA non-coding downstream 105964 5744902 ~ 5747277 (+)
LOC111194876 NA non-coding downstream 108383 5747321 ~ 5762851 (+)
G165283 NA non-coding downstream 111745 5750683 ~ 5753452 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 330261 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3135998 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 3790902 1802787 ~ 1838087 (+)
tspear tspear other upstream 3868429 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 4132609 1404101 ~ 1496380 (+)
LOC107196936 NA other downstream 478426 6117364 ~ 6123051 (+)
G165406 NA other downstream 505999 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 521462 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 701057 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1746195 7385133 ~ 7485349 (+)

Expression


Co-expression Network