tanc1 (tanc1,LOC108266469)


Basic Information

Item Value
gene id tanc1
gene name tanc1,LOC108266469
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 184448 ~ 366848 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680021.1
gagaggaggagggaggagcCCCGCGCGCGTTCCTCCGGAGGACTCATGTGGAGAGATAAGCGCTGGGAAAGTTTTCTGCCGGAGAATTCATGACCAAAACAgGGTGAATAAGAGTGAGAAGACTGCAGTGGAGGCACAATGTTTAAAGCAGTACTGAAAATGAACAGAGATGGAGGGAAGGGAAGCAAGAAGGATACGGTTGGTGAGCCGCACTTGCTTGGTGCCCAGAGGAAAGGGCTGGGCAGTGCTGTACAGGACCCTGGCAGTATTGCTCCTTGTCCTGCTGAAGAGAGGCTGAGGCTCAGCTTGTCTAAAGGAGTGTCCATGTCCCTGCCGTCCTCACCCCTGCTGCCCCGACAGAACTATATGATGCCCTCGCGGTCCTGCAAGAAATCTCCAGGACCCGTCAGAAAGCCCAAATATGTGGAGAGTCCTCGAGTTCCTGCAGATGCCATCACGTCTGCGCTAAGGAAGGCAGCCGACAGCAAAGATGaGCCGGCTAGTCCTGGCCCCTCCCCCGCCACTCAGGAGTTGATGACACGGTTGGGCTTCTTGCTGGGCGAAGGCATCCCGGGCTCTGCACGCATACCTATGGACAACAAGAATGAAAAGAAGTGCTCAGTGAATCAAGGGGTGAGTCCTTGCTCCACACTGACCAGTAGCACAGCTTCTGCGTGTACAGACAGCCCCTGCTCCACTCTGAACAGCAGCGCCAGCCACCCTCCCACCAGCCAGCGCAGCCCCTGCGGCACTATCACCAGCCCCAGCTCCACTTTGGAAAGCAAGGACAGTGGGATCATAGccaCCATCACCAGCTCCTCTGAGAATGATGACCGCAGTGGGTCCAGTTTGGAATGGAGTAAGGAGGGAAGTGTAAGAGGAGGTGGGCACCATGCGCTGGCTCCAGCCGCCGCGCGTGCGGACACCTGCTCTCCAGTGGCTGAGGAGGAAGTGTCCACAGCTGCTGCAGACGCCTCTGCGATCAGCCGGGTCGCAGCCGCTGTGACTGCGGGAACAGGGGCAGGAGCGTCCAATGCTGAGGGTCCAGTCCATTACCCAACACAGAGCTTCTCCAGCCTCATGATGCCCAGGCCCAACTCAGTCGCAGCTACCAGTTCCACTAAATTGGAAGACCTGAGCTATCTTGATGAGCAGCGTAACACACCACTGCGCACCTCCATACGGATGCCCTGGCACAACACCGGAGGAAGGCCACCCCAAGACAGAGCACGCTTCGCTCCATATAAGCCTGCGGATATCATGCTAAAGCCTCTACTGTTTGAGGTTCCCAGCATCACTACGGACTCGGTGTTTGTGGGCCGAGATTGGCTGTTCCAGCAGCTGGAGGATGTCCTGACTGACTGTCAAACAGGCGAGAGCCGTGGGGTCACTGTCGTGGGCAACGTGGGCTTTGGAAAGACGGCCATCATCTCCCGATTGGTAGCCCTCAGTTGCCATGGAGGCCGTATGAGACAGATCGCCTCCAATAGTCCCAACGCTTCCCCCAAAACTGGGGAGCAGGGCTCAGAGTTACCATTGAGTCAGCCAACACAGCCCACCCCACCGCCCAGCGCTACCAACACACTGCAGACCGACAGCTGCCCCAGTACACCTGAGCTCCGCAGACACAGAGAGGAGGCTGTCAAGCGGCTCGCATCAAAGgtggttgcatATCATTACTGCCAGGCTGACAACACCTACACCTGTCTTGTGCCTGAGTTTGTGCACAGTATCGCTGCCCTTCTCTGCAGATCCCACCAGCTCACGGCCTTTAGGGAGCTCCTTCTGAAAGAACCACACCTTCAGAGCATGCTCAGCCTGCGCTCCTGCGTCCAGGACCCAATGGCTGCTTTCCGCAGGGGCGTACTGGAGCCTCTTATCAACCTGCGCAAAGAGAGAAAGATTCCAGAAGAGGATTACATCATCTTGATCGATGGGCTGAACGAAGCAGAGTTTCACAAGCCAGACTATGGTGACACCATTGCGTCATTCATTACCAAGATTATTTCAAAGTTCCCCACCTGGCTCAAACTCATCATCACTGTACGGGTCAGTTTACAGGAGATCACCAGTCTGCTGCCCTTTACTACGATCAGCCTGGATGACTTTCCCGATAACAAGGAGATCGGCGCAGACCTGAACGCCTACATCCAGCACCGTATCAACAGCAGCCGTGACATCCTGAACAACATCTCTCTGAACAGAAAGGCTGACCCCATTATTGTGGGCAAGGTCAGCTCCCACCTCATCTCCCGCAGCCAGGGGTCATATCTCTACCTGAAACTCACCCTGGACCTGTTTGAGAGGGGCCACCTTGTCATCAAAAGTGCCAGCTACAAGGTGGTGCCTGTCTCCCTCTCTGAGCTGTACCTGCTGCAGTGCAACATGAAGTTCATGAGCAACTCTGCGTTTGAGCGCGCCGTGCCCATCCTCAACGTGGCCCTGGCGTCTCTGCACCCGATGACGGACGAGCAGCTGTTCCAGGCTCTAAACGCCGGCTGTGTGCGAGGAGACCTTCAGTGGGATGATTTCCAGCAGCGCATGGATATGCTCTCCAGTTTCTTGATCAAGCGCAGAGATAAGACACGCATGTTCTGTCACCCGTCCTTCAGAGAGTGGCTCGTGTGGAGAGCTGACGGTGAAAGCTCAGACTTCCTCTGCGACTCCAGGAGTGGACACGCCCTGATGGCATTCATGTTGTCCAGGCAGGAGGGCAAGTTAAACAGGCAGCAGACAATGGAGCTTGGGCACCACATTCTGAAAGCACATATATTTAAGGGTCAAAGTAAAAGGACTGGAGTATCATCTAGTGTCCTGCAGGGTTTATGGATCAGCTGCAGCACCGACAGCCTGTCTGCTGCCCTGGCGTCTCTAAGGAACCTATACACACCTAATGTCAAGGTGAGCCGCTTACTGATGTTGGGTGGGGCAAACGTGAACTACCGTACGGAGGTGCTAAACAATGCGCCAGTGCTGTGTGTACAAGCACACCTCGGTCATCAGGAGATGGTGGGTTTGCTGCTGGAGTTTGGGGCAAATGTGGATGTAGTATCGGAGAATGGTACCAGTGCACTCAGTTATGCTGCCGCAGCCGGTCACCTGGGCCTCATCAGCATGCTCTGCAAGAGAGGAGCCAAGGTGGATCACGTGGATAAGAGTGGACAATGTGCTCTGGTGCATGCAGCTCTGAGGGGGCATCCTGACATTATCCAATACCTGCTGGAACAGCAGTGGAGCAGAGAGGATCAGCAGCATGAGCTCAGCCTGAAGAGCAAAGCCCTGCAGCAAGCTCTTATAGCAGCTTCCAGCATGGGACACACGCAGGTCATTATGAAGCAACTGCTGGCATTAGAAAATGGTTGTATTATGAcgttcgatgctttcgatactCTTTGGACTGctcttacagcagcagcaggtcggGGGAAGATGGATGTGTGTACTTACCTGTTGGAGGAAGGTGCACAGGTTCAGCAGGTGAACAGAAGAGGAATGTGTGCGCTTTTTTGCGCTGTGAGACAGGGACACTGGCAGATAGCGGATGTGTTGTTGCAGCATGGTGCAGATGTGAATGGAAGTGATAAGCAGGGGCGCACATTGCTGATGGTAGCAGCAAGTGAGGGCCATCTTAGCACTGTGGAATTCCTGCTCTCTAAAGGCGCCTCTTTTACATCGGTGGATAAGGAGGGGTTAACTCCTCTGAGCTGGGCGTGCTTGAAAGGACATAAGAACGTGGTTCAGTTCCTGGTGGAGAAGGGTGCGGTTATAGACCACTCAGACAAGAATGGACGCACTCCTCTGGACCTGGCAGCTTTCTATGGAGATGCAGAGATTGTGCATTATCTGGTGGAGAGAGGAGCTGTGATTGAGCATGTGGATTACAGTGGAATGAGGCCTTTGGATCGGGCGATAGGCTGCAGGAACACTTCAGTGGTTGTCACTTTACTCAGGAAAGGGGCTAAACTAGGCTACAGAACATCTCCTTATGATCGAACAGGTAACGCCGCTTGGGCAATGGCCACGTCTAAGCCTGACATCCTCATAATCCTGCTACAGAAGCTCATGGAGGAGGGCAACCTGCTTTACAAGAGAGGGAAGATGAAGGAGGCAGCTCAGAGGTATCAGTATGCTCTGAGGAAGTTTCCCAGAGAAGGCTTTGGTGAAGAGCTGAAGGCATTTCGAGAGCTGAGAGTCTCTCTGTACCTCAACCTTTCACGCTGCCGCAGAAAAACGAACGACTTTGGCATGGCTGAGGAGTTTGCCACAAAGGCACTGGAGCTGAAGCCTAAGTCCTATGAAGCGTACTATGCTCGAGCCCGAGCTAAGAGGAGCAGCAGGCAGTTCACTGCAGCATTAGCTGATCTGCATGAGGCAACTAAGCTCTGCCCCAACAATCGTGAGATCCGGCGACTCCTGTCCAGAGTAGAGGAGGAGTGCAAACAAATGCAGCGTGCCCAAAACAAACAGCAGGGGGCATCAAATCAGTCTGAAGGTGACCACGACTCAGACCGTGAGCGTGAAGAGGGGGAGGAAGATGATCTGACGGAGTCTAACAGTCTGGGGAGGGACCTGGATGAAGAGGAGACCTCTCAGCTTGACTCCAGAGCTGAGCCCTGGGCGCAGAACATCTACCAATTTAATCGGACCTTGCCGGACTCTGTGGGTAACGGTCAACAATCCGGCCGCCCGGGCTCTCCTTCCCACAGACAAAGCCAGAGGCAACACCAGCGGGAGCCGGTGGCCCACAAAAGCCTGATTCTGCAGCCCACCAAACAGGCCCAAATTGTTAAAACCAACCAACACCTAATCTCCCTCCAGGCAAGTTCTACACAGCCGACAGCCAGCAGTAAGTCTCAAACCCATGGCCATTCAAGCCCGCTTCCTGGACGCCACATGCTGAAGGCAGGACCAGGCATTGACATCAGCCCTCTACCTGCCTCTAGTGATGAATTAGGCCACGCAACCACTGCCACAGGTCACCATGAAAGTGAAGGTATCCTCCTGTCTCAGGCATACTCCTCCTCAAGCTCCTGCAGGGCTCCAGAGAGACTCTCGGCCCATTCTGTGAGTTCTTTGGAAGGTCTGGTTCTGTCAGCAGCACCTGGATCACAGGATCTTAGAAAAGAGACAGCGCAGGGAGCAGGTTCGGGCTCTGGGTCTCAGGCAGGTAGTATGAGGGTCTCCAGCTCGACCAGCAGTctggcatccagcagcagcctgtcagaCAGTGGGAAGCTTCAAGGCCCAGATGTTCGCACCAAAACCAGTGTGGACAAAAGCAAGCCAGCACAGGGAGGAACTGCGGAATACAAACCCAGACCTTTCATGGGCATTATGGACAAGACGGCACGCtttcagcaacagcagcagcagcagtgcctTCAGTCTCGTGGCTGGCAGACTCACTCCTCAGACAGCCACACTATGTCTTCAGCAGGAGTGAACTGTGAGTTAGCATACTCCAAACCCAGCAACACTTACCACGAGCAGCTCAAGGCTTCTTCTCAGGGAGCTGCTCTCGGGAGCCTGCACAACGGCAGCCTGCACGCTAAAGAATTCAACGACAAGTTCTGCCAGGCCGCCACCTGTTACAAAGAATCCAAGCCAGCTGTTGCCATGGCGCATTCCTACACGGACAGTAAGCCCAAGCACCCCAGCTTAGCCCGAGATAATCCTGccattcatgtagcttcaatGAAACCAAAGCGATCCTTTATCGAGTCTAATGTATAGAGCCTATTCAGAAAACAACCGTAACCTATAGCCCGcactctctttcacactttctctgacacccatgcacacacacagacacacacacacgcacacctctaatattaaatgaaagtattttgtttttattttctctcttttgttttgttctgtctGTCCCAGTAAAGCCAAAAGTGTTCGCAAAGGGGCTTCTTGCTTACTATGCTTCAGCCACACTGGAGACTTAACCACTGAAACAGGGCACACAGAAATCAACACACAGCACTTTACAAACCATGACTGCAAATCTGTCAAgtgctcaaaacacacacacacttacaacacacactcacatgggAGCTTATGCAGTTGACTCTAAATAAGATTACTGTATCACTGGTGCTGACAAACGAATACAAATTTAGATAGGAATGAGTGATTTAATATCAGAATGACAGAAGAGGTCAATAATAAGAGGCATTCCTGTGGTTTGAGTAGGATCATTAACCACTAGCGCAATGAGTCTCAGTTCCTGTATGAAGCCACAGCTGTAATGGTCATTAAGTTCTTAACAAAATGATgctaagtgtttaaaaacaaaataaaaaataaaacacttaactGAACTCCATCCAGGACTGGATTAGAGAATTTGCTCTAGCCTGTAAATAGTAACAGTGTGCATTTTCTAGCCTGTTTACGTGAAGGTCTACATCAATGTATTTGGTTTGTTGAGAAAACCGTTCTGTGtatttttgagttttatttcATGCACATTATTTTGGTCGTTTCAGATGTTTgaggttataaaaaaatatatatacctggtttgtatgtttgtatagTATACATATGGATTTGctcatttaatgttaaaagcTGAATTTCTCTACTTCTATGTGCTTGTTGTTTTGCTGTCTAGGATAATTTATTTACAGCGCCTCTGGCTTGGTAATTGTAAaagcaatatattttatatagttatttttgcacagctaataaaaaaaaagatttttaaatttcaataaGAAGATCTATAAATATGGAGATCACATGGGCTGAAGTGCATGTCACAGTTgccatttttaataaaagagttaatacagtatacagtgaaAATATGAGAGATATTAGGCTTCGGGGCAAGCAGTTCTATTTTGTTAAGTATGTTATTTGCAATCGTCGCCATGTTTCAGTAATGTGCGGAACTGTACTCTCTTTAATCACATGCTGTAAAGATGCATTACTGCCATTATTCAtcaacaggaaataaaaagtcCCACTGTTAAACAGCTA

Function

symbol description
tanc1 Predicted to be involved in regulation of postsynapse organization. Predicted to act upstream of or within dendritic spine maintenance; myoblast fusion; and visual learning. Predicted to be located in several cellular components, including axon terminus; neuronal cell body; and postsynaptic density. Predicted to be active in glutamatergic synapse and postsynaptic density, intracellular component.

NR:

description
PREDICTED: protein TANC1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680021.1 True 7008 mRNA 0.51 29 184448 366848

Neighbor

gene id symbol gene type direction distance location
cers6 cers6,LOC107564136,LOC107677898 coding upstream 27394 105214 ~ 157054 (+)
tank NA coding downstream 246242 613090 ~ 626626 (+)
tbr1 tbr1,LOC106511624 coding downstream 293753 660601 ~ 666804 (+)
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding downstream 308212 675060 ~ 750486 (+)
LOC103030276 LOC103030276 coding downstream 1352444 1719292 ~ 1724952 (+)
LOC103029311 NA coding downstream 1408603 1775451 ~ 1783041 (+)
G164118 NA non-coding downstream 119086 485934 ~ 486739 (+)
G164123 rbms1,LOC108266580,LOC105908026 non-coding downstream 140997 507845 ~ 520172 (+)
G164194 NA non-coding downstream 335433 702281 ~ 716718 (+)
G164253 kcnh7,LOC106917580,LOC103474219,LOC101482208 non-coding downstream 473033 839881 ~ 845477 (+)
G164276 NA non-coding downstream 577749 944597 ~ 944874 (+)
nostrin nostrin other upstream 9523 131108 ~ 174925 (+)
G164126 NA other downstream 171431 538279 ~ 572193 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other downstream 1037253 1404101 ~ 1496380 (+)
tspear tspear other downstream 1377558 1744406 ~ 1760560 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other downstream 1435939 1802787 ~ 1838087 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 2123196 2490044 ~ 2492991 (+)

Expression


Co-expression Network