LOC103028997


Basic Information

Item Value
gene id LOC103028997
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 1783878 ~ 1796747 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680047.1
TGATCGATGTAGGTGATTGATAATAGGTTTGGGTTTGGATTTGAGCTCGTGCTGTGTTGTGGGTGAAGCGCGCACGGGCtgcaggcagtgtgtgtgtgtgttcgttcaCTCCGCGCGCGACCTGTCGGGGTGCGCGCGCCGGGCTGCTGTTATTTTCCAGCGATTTTTTTGTTCTGATTTTATCGGGAAGCAGCGCGCGCTGGGATCCCGCTGAACTGCATACCCTCGCGACCCCCGGGGGCCCCGGGGGGCTTTATACGAGGAGCCTTTCTGCGGAGTGGTGGGGGTCCCGAGCACAGCGCTCGCAAACaggGAATGAAGTGATACTAGTGTGGTAGTGAATGTTACACACTCTACGCAGAAGGAGGCTAAAGTAGTGGTGGAGAAGTTAGAAGTCAGGGCACCAGTGTAAGGATTGCTCCGTCAGAGTCCGCTACATACTGCATATGGACCCCGACACCCCACAGCCCTCACGCAGTGGCCGGGACCCTCGCCTGCCCGGCCCCTCGGGAGAGCTCTCAGGTTTCCGGAACAAACCTCCAGACTTCCCCCTGCGCATGCTGGTGCCCAGCCAGTTCATAGGAGCCATCATCGGCAAGGAGGGGCTGACCATCAAAAACCTCACCAAGCAAACACAGGCCAAggtGGATATCCACCGTAAGGAGAATGCAGGAGCAGCAGAGAAGCCCATCACCATCCACTCCACCCCGGAGGGCTGCTCCGCCGCCTGCCGCATGATCCTCCAGATCATGCAGAAAGAAGCCAACGACACCAAGGTtacagTAGAGATCCCTCTGAAGATTCTGGCTCATAACAGTCTGGTGGGTCGGCTGATCGGGAAGGAGGGGAGGAACCTGAAGAGGATCGAGGAGGAAAGCGGGACCAAGATCAACATTTCATcgctgcaGGACGTGAGTGTGTATATCGCGGACAGGACGATCACGGTGAAGGGCAGTGTTGATGCGTGCTGTAGAGCTGAGGAGGAGATCATGAAGAAACTGAGGGAAGCGTACGACAATGACACCTCTGCTGTTAATCACCATACAGGTCTAATCCATGGAATGAACCTCAACACTTTGGGCATCTTCTCCTCAGGGCTCTCCATGCTTCCCTCAAACTCCTCCCCATACAGGACccccaacacaccacacactgcctACAGCCCCATAAtgGGTCACTCTGCAAACCTGGCGGGCCTGTATGGACGTTCACCAGCTGctgctcacactcactctcactcagcTGCTGAGCAGGAGGTGGTCTACCTCTTCATCCCCACCCAGGCTGTGGGGGCTCTGATTGGGAAAAAGGGACAGCATATTAAACAGCTCGCACAATACGCTGGAGCATCTATTAAGATCGCTCCTGCAGAGAATCCAGATGTTACAGAAAGAATGGTCATCATCACTGGACCTCCTGAAGCTCAGTTTAAGGCTCAGGGCAGGATATTTGGAAAGCTAAAGGAGGAGAATTTTTTCTCGGCGAAAGAAGAAGTGAGGCTGGAGACCCACATCAAAGTTCCCTCCTCTGCAGCTGGACGGGTCATAGGGAAAGGCGGGAAAACGGTTAATGAGCTGCAGAATATGAGCAGTGCTGAGGTCATAGTGCCCCGTGATCAGACTCCAGACGAGAACGACGAGGTGTTTGTAAAAATCAGCGGCCATTTCTTTGCTAGCCAGACAGCACAGAGGAAGATTAGGGAGATAATTCAGCGGGTCAGGCGTCATGAGCAGAAACAACATCTTGGACCCTCAGAACCGCACAACTCCCAGTGACCTCCAGGGGACGACCACAGCTGGCGAATGTAGTCCTCCTGGCCAGCAGGGGGAGCCAGGGTGTCCTACCAAGCAGAGTGATCTACAGCGTGTGTGTGGCGTGAGAGTGTGTATTGCAGATTGTGACAGTGGTGCTAACATCCTGATAGCCACTGTTCATCATCTGGCCATGTAGCCAATAAATGAAAAGAAGGCGGGGCTTGCACTGTGGACACACCCCTGGGCGTGTTATTCTGAGGAGTGTATGAACCGTATAGCCGTAACGTTTGGGCTTACCTTAGGAGGAGCTGGATACGTCGTTCTACTGCAGAACTGACCTGTGTAGAACAGAACATGGACAGAACCgagctaaaaaaaacatacaggggttgg
>XM_022680049.1
TCTGATCGATGTAGGTGATTGATAATAGGTTTGGGTTTGGATTTGAGCTCGTGCTGTGTTGTGGGTGAAGCGCGCACGGGCtgcaggcagtgtgtgtgtgtgttcgttcaCTCCGCGCGCGACCTGTCGGGGTGCGCGCGCCGGGCTGCTGTTATTTTCCAGCGATTTTTTTGTTCTGATTTTATCGGGAAGCAGCGCGCGCTGGGATCCCGCTGAACTGCATACCCTCGCGACCCCCGGGGGCCCCGGGGGGCTTTATACGAGGAGCCTTTCTGCGGAGTGGTGGGGGTCCCGAGCACAGCGCTCGCAAACaggGAATGAAGTGATACTAGTGTGGTAGTGAATGTTACACACTCTACGCAGAAGGAGGCTAAAGTAGTGGTGGAGAAGTTAGAAGTCAGGGCACCAGTGTAAGGATTGCTCCGTCAGAGTCCGCTACATACTGCATATGGACCCCGACACCCCACAGCCCTCACGCAGTGGCCGGGACCCTCGCCTGCCCGGCCCCTCGGGAGAGCTCTCAGGTTTCCGGAACAAACCTCCAGACTTCCCCCTGCGCATGCTGGTGCCCAGCCAGTTCATAGGAGCCATCATCGGCAAGGAGGGGCTGACCATCAAAAACCTCACCAAGCAAACACAGGCCAAggtGGATATCCACCGTAAGGAGAATGCAGGAGCAGCAGAGAAGCCCATCACCATCCACTCCACCCCGGAGGGCTGCTCCGCCGCCTGCCGCATGATCCTCCAGATCATGCAGAAAGAAGCCAACGACACCAAGGTtacagTAGAGATCCCTCTGAAGATTCTGGCTCATAACAGTCTGGTGGGTCGGCTGATCGGGAAGGAGGGGAGGAACCTGAAGAGGATCGAGGAGGAAAGCGGGACCAAGATCAACATTTCATcgctgcaGGACGTGAGTGTGTATATCGCGGACAGGACGATCACGGTGAAGGGCAGTGTTGATGCGTGCTGTAGAGCTGAGGAGGAGATCATGAAGAAACTGAGGGAAGCGTACGACAATGACACCTCTGCTGTTAATCACCATACAGGTCTAATCCATGGAATGAACCTCAACACTTTGGGCATCTTCTCCTCAGGGCTCTCCATGCTTCCCTCAAACTCCTCCCCATACAGGACccccaacacaccacacactgcctACAGCCCCATAAtggcTGCTGAGCAGGAGGTGGTCTACCTCTTCATCCCCACCCAGGCTGTGGGGGCTCTGATTGGGAAAAAGGGACAGCATATTAAACAGCTCGCACAATACGCTGGAGCATCTATTAAGATCGCTCCTGCAGAGAATCCAGATGTTACAGAAAGAATGGTCATCATCACTGGACCTCCTGAAGCTCAGTTTAAGGCTCAGGGCAGGATATTTGGAAAGCTAAAGGAGGAGAATTTTTTCTCGGCGAAAGAAGAAGTGAGGCTGGAGACCCACATCAAAGTTCCCTCCTCTGCAGCTGGACGGGTCATAGGGAAAGGCGGGAAAACGGTTAATGAGCTGCAGAATATGAGCAGTGCTGAGGTCATAGTGCCCCGTGATCAGACTCCAGACGAGAACGACGAGGTGTTTGTAAAAATCAGCGGCCATTTCTTTGCTAGCCAGACAGCACAGAGGAAGATTAGGGAGATAATTCAGCGGGTCAGGCGTCATGAGCAGAAACAACATCTTGGACCCTCAGAACCGCACAACTCCCAGTGACCTCCAGGGGACGACCACAGCTGGCGAATGTAGTCCTCCTGGCCAGCAGGGGGAGCCAGGGTGTCCTACCAAGCAGAGTGATCTACAGCGTGTGTGTGGCGTGAGAGTGTGTATTGCAGATTGTGACAGTGGTGCTAACATCCTGATAGCCACTGTTCATCATCTGGCCATGTAGCCAATAAATGAAAAGAAGGCGGGGCTTGCACTGTGGACACACCCCTGGGCGTGTTATTCTGAGGAGTGTATGAACCGTATAGCCGTAACGTTTGGGCTTACCTTAGGAGGAGCTGGATACGTCGTTCTACTGCAGAACTGACCTGTGTAGAACAGAACATGGACAGAACCgagctaaaaaaaacatacaggggttgg

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680047.1 True 2147 mRNA 0.54 13 1783880 1796747
XM_022680049.1 False 2080 mRNA 0.54 12 1783878 1796747

Neighbor

gene id symbol gene type direction distance location
LOC103029311 NA coding upstream 837 1775451 ~ 1783041 (+)
LOC103030276 LOC103030276 coding upstream 58926 1719292 ~ 1724952 (+)
slc4a10 slc4a10,LOC557642,LOC107674766,LOC107730592,LOC107722898 coding upstream 1033392 675060 ~ 750486 (+)
tbr1 tbr1,LOC106511624 coding upstream 1117074 660601 ~ 666804 (+)
tank NA coding upstream 1157252 613090 ~ 626626 (+)
ehhadh NA coding downstream 9648 1806395 ~ 1822220 (+)
nup35 nup35,LOC106582498,LOC107749876 coding downstream 73739 1870486 ~ 1878855 (+)
LOC111194854 NA coding downstream 83401 1880148 ~ 1882693 (+)
znf804a znf804a coding downstream 296602 2093349 ~ 2191914 (+)
LOC103024889 nxph2,LOC108413064 coding downstream 643909 2440656 ~ 2473897 (+)
G164376 NA non-coding upstream 75237 1706881 ~ 1708641 (+)
G164284 NA non-coding upstream 794365 989297 ~ 989513 (+)
G164282 NA non-coding upstream 831449 952065 ~ 952429 (+)
G164276 NA non-coding upstream 839004 944597 ~ 944874 (+)
G164253 kcnh7,LOC106917580,LOC103474219,LOC101482208 non-coding upstream 938401 839881 ~ 845477 (+)
G164400 NA non-coding downstream 79697 1876444 ~ 1877085 (+)
G164404 NA non-coding downstream 106319 1903066 ~ 1906873 (+)
G164475 NA non-coding downstream 319096 2115843 ~ 2118502 (+)
G164479 NA non-coding downstream 382355 2179102 ~ 2180592 (+)
G164467 NA non-coding downstream 396068 2192815 ~ 2193188 (+)
tspear tspear other upstream 23318 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 287498 1404101 ~ 1496380 (+)
G164126 NA other upstream 1211685 538279 ~ 572193 (+)
nostrin nostrin other upstream 1608953 131108 ~ 174925 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other downstream 6040 1802787 ~ 1838087 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 693297 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 3471292 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 4320617 6117364 ~ 6123051 (+)
G165406 NA other downstream 4348190 6144937 ~ 6145969 (+)

Expression


Co-expression Network