LOC103024889 (nxph2,LOC108413064)


Basic Information

Item Value
gene id LOC103024889
gene name nxph2,LOC108413064
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2440656 ~ 2473897 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680063.1
CTAGAGCTCCAGAAGCGCGCGCGCTAAAGTCCGAAAGCGTCCAGCGGCAGCCATGTAGGAGCGCGCGAGCGCGAGACAGCTGACCCCTCACCTGCCGAGTCCGACCCAAGgaacacacgcacgcacacgctCGCGCGCAGGAATGTAGAAAGGTGCGCGAGACACTAAACTAAACTCACTAAACCCCTCAGCTCAGCGGAGCTGGATCTGCACCGGTGGGACCCTCTCGGCTCGCGCTGTACCGGTGGGACCCCCTTTGGCGCGCGCTGCCATAAAACCCCCTCAGCCTTCACTGATCTGcgtttataaaaaagaaaatcagccGAACGTCGCGAGCCGGACAGATCACCAGGACAGCGATGGTGTGCACTGAAGCTCCTGCAGAACATCTGGGCTTCTCGCTCATCCACAGTGTGTAAGAgttcagagtgagagagagagagacggtcCGGCAAAATGAGGAAACTACAGACTCTATTATTCCTGATCTGTTTACACAAGgTCACATGTCGGCGGTTGTGGATCCCGGAGCTGGGTGTGATGGAATGGGAGGAAAGCCGTAACGAGGGTTTGAGCGTGAATCCCAAAGGAACAAACCCGCGAGTCCCCAACCCCCTGCGCCTCTTCTCCAGGGGCTCCCCGAGCCCGAAGAGCGGCCCGAGACAGGAGGCGTATTTGGAAAACATGGAGGACCCCTGGGACTGGTTATCTAACCGGACAGATGTCGGGGAGGCGCCAAGCAGGACTAAGCGCAGGCCCATCGTGAAGACGGGGAAGTTCAAAAAAATGTTCGGCTGGGGCGACTTCAACTCCAACATCAAGACCGTGAAGCTGAACCTCCTCATCACGGGGAAGATCGTGGACCACGGGAACGGGACCTTCAGCGTCTACTTCCGCCACAACTCCACCGGCCTGGGGAACGTCTCCGTCAGCCTGGTCCCTCCCTCCAAGGTGGTCGAGTTCGAAATGGCTCAGCAGAGCACGCTGGAGACCAAGGACTCCAAGGCCTTCAACTGCCGCATCGAGTACGAGAAAACGGACCGCAACAAGAAGACTGCGCTGTGCAGCTTCGACCCGTCCAAAGTGTGCTACCAGGAGCAGACGCAGAGCCACGTCTCCTGGCTCTGCTCCAAGCCCTTTAAGGTCATATGCATCTACATCGCCTTTTACAGCGTCGACTACAAACTGGTGCAGAAAATCTGCCCCGATTACAACTACCACAGCGACACGCCCTACTCCTCCACGGGGTAAACGGGGAAAAACGGTGCGCTCGGACGGCCCTCTCTCGCTCGGAAACCTCATTAAATTTTACAAGGATCTTCTGTTCAAGTACAATCTCTAAAACCATAGCATTTATCAGTGTAGAAATTGGGAGGAAACCTAACTGGATCAGCTTCACAGAGAAAGAGGACATTTATCAGTagagaaaaaacatatttcaaagATGTTTTAGAGTCGCATAATACACACCTGAAACATTACACATTAAAAACTCAACCATTATCCTGTTTATTCAGACCAATTATAGAAAttcaggtaacactttattcagatggtccatttgatggcctcattGATACTCAACTAATATTAACTAACATTCagctgcatgtctattaaatgcaattgaactgaaagGA

Function

symbol description
nxph2 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region.

NR:

description
PREDICTED: neurexophilin-2-like, partial

GO: NA

KEGG:

id description
K16657 NXPH2; neurexophilin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680063.1 True 1640 mRNA 0.53 3 2440656 2473897

Neighbor

gene id symbol gene type direction distance location
znf804a znf804a coding upstream 248742 2093349 ~ 2191914 (+)
LOC111194854 NA coding upstream 557963 1880148 ~ 1882693 (+)
nup35 nup35,LOC106582498,LOC107749876 coding upstream 561801 1870486 ~ 1878855 (+)
ehhadh NA coding upstream 618436 1806395 ~ 1822220 (+)
LOC103028997 NA coding upstream 643909 1783878 ~ 1796747 (+)
kansl1l NA coding downstream 130161 2604058 ~ 2655714 (+)
map2 map2 coding downstream 186558 2660455 ~ 2875066 (+)
cps1 cps1 coding downstream 438110 2912007 ~ 3011890 (+)
LOC103033219 NA coding downstream 1566089 4039986 ~ 4043593 (+)
vwc2l vwc2l,LOC107660607 coding downstream 1905125 4379022 ~ 4448620 (+)
G164518 NA non-coding upstream 33104 2402534 ~ 2407552 (+)
G164516 NA non-coding upstream 38637 2398876 ~ 2402019 (+)
G164505 NA non-coding upstream 50879 2388628 ~ 2389777 (+)
G164510 NA non-coding upstream 69231 2371196 ~ 2371425 (+)
G164501 NA non-coding upstream 143669 2296533 ~ 2296987 (+)
G164537 NA non-coding downstream 9666 2483563 ~ 2487195 (+)
G164540 spopla,LOC108412981,LOC107658226,LOC107556446,LOC107558043,LOC107720326,LOC107751611,LOC108270802 non-coding downstream 22700 2496597 ~ 2501144 (+)
G164590 NA non-coding downstream 183225 2657122 ~ 2732983 (+)
G164610 NA non-coding downstream 218696 2692593 ~ 2693184 (+)
G164633 NA non-coding downstream 297449 2771346 ~ 2771853 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 602569 1802787 ~ 1838087 (+)
tspear tspear other upstream 680096 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 944276 1404101 ~ 1496380 (+)
G164126 NA other upstream 1868463 538279 ~ 572193 (+)
nostrin nostrin other upstream 2265731 131108 ~ 174925 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other downstream 16147 2490044 ~ 2492991 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 2794142 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 3643467 6117364 ~ 6123051 (+)
G165406 NA other downstream 3671040 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 3686503 6160400 ~ 6237986 (+)

Expression


Co-expression Network