cps1 (cps1)


Basic Information

Item Value
gene id cps1
gene name cps1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 2912007 ~ 3011890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680069.1
tgatttttttttactttttctccaCGCGGTGCTGTTTTCAAACCCGGCGGACCGCTGCGCTCCTGTCCCGGCCACCCGAGACCCCAGTACCCGGTAACACAGCGGGAATATCCGCGGAGACATGCTGAGAGGAGCCGCCGTCCTTCTGAAGCGCCGCTGGCCGCCCAGAGCGTCCTCACACCGGCTACTGAGCCTGAAGGCCCAGACTGCACACCTGGTGCTGGAAGATGGCACGGTGATGAAGGGCTACTCCTTCGGCCACAGACAGTCTTCAGCTGGGGAGCTGGTGTTCAACACGGGGCTCGTCGGgtatcCAGAGGCCCTCACTGACCCCAGCTATAGAGGTCAGATCCTTACACTCACTTACCCCATTGTGGGGAACTATGGAGTACCAAACACACAGGAACTGGATGAACTGGGCCTGAGAAAGAATGTGGAGTCTGACCGCATTCAGGTCTCAGGACTGCTGGTGCAGGACTACAGTCATGAGTTCAGCCACTGGAACTCGGTGAAGTCTCTGGGTCAGTGGCTGCAGGAGGAGAAGGTACCTGCTCTATATGGGGTGGACACTCGGATGCTGACCAAGATCATTCGAGATAAGGGCACAGTGTTGGGGAAGATCGAGTTTGAAGGTCAGCCAGTAGACATAATAAACCCAAACGAGAGGAACCTTGTAGCAGAAGTCTCCACTAAggaaactcAAGTTTTTGGGAAAGGAAACCCTATTAAAGTGGTTGCAGTGGACTGTGGGATCAAGCACAACATAATCAGATTGCTTGTCAAGcGTGGTGCCGAAGTTCATCTGGTGCCATGGAATCATGATCTCATGAGTTTGGAGTATGACGGTCTTTTCATCTCTAATGGACCTGGAGACCCGTCTCTGGCTGAAACGCTGATTCAGAACGTTCGGAAGgTGCTGGAGAGTGATCGGCCTCAGCCTGTGTTTGGGATCTGCATGGGGAACCAGATCACAGCTTTGGCAGCTGGAGCTCAGTCTTATAAACTGCCCATGGGAAACAGAGGTCAGAACCAGCCGGTGCTGAATGTGATGACGGGTCAGGCCTTCATCACCGCTCAGAATCACGGCTACGGAATAGACAGCGAGTCTCTGCCTCCGGGCTGGAGCCCACTGTTCGTCAACGCCAATGACGGAACCAATGAGGGCATCATGCATAACAACAAGCCCATCTTCACTGCACAGTTCCATCCAGAGGCAAAGGGAGGACCCACAGATACTGAGTTCCTGTTCGATTCCTTCTTGTCCCTGATAAAGAAGGGGAAGGACGCGAGCATTGTGTCGGTGATGCCGAAGAAGCCTGTGCTTCCACAGAGAGCCCAGGTCTCTAAAGTATTGGTACTGGGCTCTGGTGGTTTGTCTATTGGTCAGGCTGGAGAGTTTGATTATTCAGGATCACAGGCTGTTAAAGCCATGAAGGAGGAGAACCTGAAGACCGTGCTGATGAACCCCAACATCGCCTCAGTGCAGACTAATGAGGTGGGCACCAAGCAGGCGGACTCGGTCTACTTCCTGCCCGTCACGCCCCAGTTTGTGACGGAGGTGATCAAAACCGAGAGGCCTGATGGCATCCTGCTCTCCATGGGGGGCCAAACTGCTCTCAACTGTGgagtggagctgTTTCGCAGTGGTGTCCTCCAGAAGTACGGAGTGAAGGTTTTGGGGACACCTGTTGAGTCCATCATGGCCACGGAGGACAGACAGCTGTTCGCTGATAAACTGATGGAGATTAACGAGAAGATCGCCCCAAGTATCGCAGTGGAATCGGTGGCAGATGCTCTGAAGGCAGCAGAGGAGATCGGCTACCCGGTGATGCTGCGCTCGGCCTATGCTCTGGGAGGACTGGGATCAGGGCTCTGTGCGGACCAGCAGAAGCTGGAGGAGACTGCACACAAGGCTCTGGCTATGAGCAGTCAGATCCTGGTGGAGAAGTCTCTGCTGGGCTGGAAGGAGGTGGAGTACGAGGTGGTCAGAGATGTAGCTGATAACTGCGTGACTGTCTGCAACATGGAGAACTTTGACCCCCTGGGAATCCACACAGGCGACTCCATCGTGGTGGCACCCAGTCAGACGCTCTCTAACGAGGAGTACCACATGCTGCGAGAGACCGCCATTAAAGTGGTGCGTCACCTGGGCATCGTGGGGGAGTGTAACATCCAGTACGCCCTGCACCCGTCCTCACTGGAGTACTGCATCATCGAGGTCAACGCCCGGCTCTCCAGGAGCTCTGCACTGGCCTCTAAAGCCACAGGGTACCCTCTGGCATTCGTAGCAGCTAAGCTAGCGTTGGGCATCCCTCTGCCCGAGATTAAGAACGCCGTGTCGGAGAAGACCACCGCCTGCTTCGAGCCCAGTCTGGACTACATCGTGACCAAGATCCCTCGCTGGGACCTGGACCGCTTCCAGGGCATGTCCCGAGAGATCGGCAGCGCCATGAAGAGCGTCGGAGAGGTAATGGCAGTGGGTCGCACCTTTGAGGAGAGCATCCAGAAGGCGCTGCGGATGTGCCACCCCTCGGTGGACGGCTTCGTGCCGCGGCTGCCCCTGAAGAGAGCCTGGAGTGAGCAGTGCGACCTGCGGCAGGAGCTGGCAGTGCCCTCCAGCACTCGCATCTTCTCCCTCGCCAAGGCCCTGCACGACGGCGTCACCGTGGACCAGATCCACCAGCTCACCGCCATCGATAAATGGTTCCTGCACAAACTCAGACGCATCACCGAGCTGGAGAAGCACCTGAGTCAGTACGACAGCTCCACAGTGCCCGGTGACGTGCTGCTGAAGGCCAAGCAGGAGGGCTTTTCAGACCGGCAGGTAGGGCAGGCCCTGGGCAGCTCTGAGGGAGAAGCCCGAGCCCTGAGGCACAGCCGCAACATCCAACCGTGGGTCAAACAGattgaCACACTTGCAGCAGAGTATCCCGCAGTCACCAACTACCTGTACTGCACCTATCATGGCCAGGAACATGACTTGGACTTCAGAGATCAGGGTGTGATGGTTTTGGGCTGTGGGCCGTATCACATTGGCAGCAGTGTGGAGTTTGACTGGTGCGCCGTGTCCAGTATCCGCACCCTCAGACAGATGGGGAAGCGTACAGTGGTGGTGAACCATAACCCAGAGACCGTCAGCACTGACTTTGACGAGTGCGACCGTCTGTACTTCGAGGAGCTGACCCTGGAGCGCATTCTGGACATCACCCAGCAGGAGTCCTGCACAGGTTGTATCGTCTCTGTAGGAGGGCAGATCCCGAACAACCTGGCCGTCCCGCTGCACCAGAACGGGGTGCGGATTCTGGGCACCAGTCCGCTGCAGATCGACCGAGCCGAGGAGCGATCTGTGTTCTCCACCATCCTGGATGATCTGGGTGTCTCTCAGGCCCCATGGAGAGCCCTCAGCTCCCTGgaaGATGCTTTTGCCTTCGCAAATAAAGTGGGTTACCCCTGCCTCCTGCGGCCGTCTTATGTTTTAAGTGGTTCTGCGATGAACGTGGCCTACGGGGAGGAGGAGATGAAGCGCTTCCTGGAGGAGGCGGCTCAGGTGTCACAGGAGCATCCTGTGGTCATCACCAAGTTCATTCGTGGAGCCCGAGAGGTGGAGGTGGACGCAGTGGCCAAGGCAGGCAAGGTGCTGGTTCACGCCatcacagagcatgtggaggacGCTGGAGTTCATTCAGGAGATGCCACCCTGATGCTGCCCACCCAGACTATCAGTCAGGGAGCCCTGGAGAAGGTGAAAACCGCCACCCGGAAAATTGCGAAGGCGTTTGAGATTTCAGGGCCGTTTAACACTCAGTTCCTGGTGAAAGGGAACGATGTCATGgtGATTGAGTGTAACCTGCGTGCCTCACGCTCCTTCCCATTCGTGTCTAAAACTATCGGTGTGGACTTTATTAACGTGGCCACCAGGGTGATGGTGGGAGAGCCAGTGAACGAGTCCCAGCTGCCCACCCTGGAGAACCCCATCATACCTGTAGATTATGTTGGAATCAAGgctCCGATGTTCTCCTGGCCGCGTCTGAGGGATGCTGATCCAGTGCTGCGCTGTGAGATGGCCTCCACTGGAGAGGTGGCCTGCTTTGGACCAAACATTTACTCAGCCTTTTTGAAGGCCATGCTCTCCACTGGATTCAAGCTCCCTCAGAAAGGCATCCTCATCGGAATCCAGcATTCTTTTAGGCCAGACTTCCTGTCCACTGCGCACCAGCTTCAGGAGGAGGGATTTAAActttatGCTACAGAGGCTACCTCAGCCTGGCTCAACGCCAATGATGTGTCTACGACCCCCGTCGCTTGGCCTCGGCATGAGGGGAAAGAGACCACCCTGCCCAGCATTAGCAGGTTGCTCAGTGACGGCCATATTGACCTGGTAGTGAACCTCCCCAACAACAACACCAAGTTCCTGAAGGACAACTTCCTCATCCGCAGAATGGCTGTGGACTACGGCGTTCCTCTCATTACCAACTTCCAGGTTGTGAAGCTGTTCGTTGAGGCCATCAAGTACTCCAGTGAGCTGGACACCACGAGTCTCTTCCACTACCGCCAGCGAGAGAACGAGCAGAAGGGCTAGAGACGCCCAGACCTCTTAAAACTCATCTCCCTTACCGAAACCTCCTGAGAAACCTCCAGGACTCTGAGCGGGTCCACCTCTGAAGGTCCGGAGTGCCACAGGGATGGAGTCTGAGGTCACTTGGAGGGTGGTTACAGTATTTCAATTCCAGGCACTCTTAAGGGTAGTGGGTGTTTTTTAActgggtattttttttaactgtgttgaAGGACACCAGCTTGCATCCAGTTGAGTATCATCAGAATAAGAATGGAAAGAAGGGGTATCTGGGATTTttgggaacttttttttttttaaagcaagatcttcttattgttgtttttcttgttgtttacATGTGTGGGTATCTTTCCTTGACAGTATTTCTTACTATGTTAAAGATAGTAATTTCTATGCCCTAAAGGGGCTGCTGGACTTCCAGAGCCTATGATTGGCTTTggctttggtttattttgtatttttataagttCTAGTCTGGTTATTCAGGCTACGATGGAGTTAGTTTACAGTAGACCACTGAAGTGATGAATTCTGCATTCTGTAGTCTTTGTTAGGATTAAATTTGGCATTCTGGGCCCAACCTCAATTTTTAGTTGCGGAAACGTATAGCAGAAATGTTGAGTAGA

Function

symbol description
cps1 Enables carbamoyl-phosphate synthase (ammonia) activity. Acts upstream of or within ammonium homeostasis and urea cycle. Predicted to be active in cytoplasm. Is expressed in ball; brain; liver; and muscle. Human ortholog(s) of this gene implicated in carbamoyl phosphate synthetase I deficiency disease; persistent fetal circulation syndrome; and vascular disease. Orthologous to human CPS1 (carbamoyl-phosphate synthase 1).

NR:

description
carbamoyl-phosphate synthase [ammonia], mitochondrial

GO: NA

KEGG:

id description
K01948 CPS1; carbamoyl-phosphate synthase (ammonia)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680069.1 True 5205 mRNA 0.54 38 2912007 3011890

Neighbor

gene id symbol gene type direction distance location
map2 map2 coding upstream 36941 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 256293 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 438110 2440656 ~ 2473897 (+)
znf804a znf804a coding upstream 720093 2093349 ~ 2191914 (+)
LOC111194854 NA coding upstream 1029314 1880148 ~ 1882693 (+)
LOC103033219 NA coding downstream 1028096 4039986 ~ 4043593 (+)
vwc2l vwc2l,LOC107660607 coding downstream 1367132 4379022 ~ 4448620 (+)
hibch hibch coding downstream 1659242 4671132 ~ 4734221 (+)
mstn mstn coding downstream 1744854 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 1798658 4810548 ~ 4817692 (+)
G164642 NA non-coding upstream 52639 2858618 ~ 2859368 (+)
G164640 NA non-coding upstream 71329 2836766 ~ 2840678 (+)
G164635 NA non-coding upstream 128412 2781665 ~ 2783595 (+)
G164633 NA non-coding upstream 140154 2771346 ~ 2771853 (+)
G164590 NA non-coding upstream 179024 2657122 ~ 2732983 (+)
G164652 NA non-coding downstream 279 3012169 ~ 3013616 (+)
G164699 NA non-coding downstream 70526 3082416 ~ 3082950 (+)
LOC111194872 NA non-coding downstream 603499 3615389 ~ 3617690 (+)
G164718 NA non-coding downstream 638485 3650375 ~ 3680035 (+)
G164725 ikzf2 non-coding downstream 788446 3800336 ~ 3802599 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 419016 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 1073920 1802787 ~ 1838087 (+)
tspear tspear other upstream 1151447 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 1415627 1404101 ~ 1496380 (+)
G164126 NA other upstream 2339814 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 2256149 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 3105474 6117364 ~ 6123051 (+)
G165406 NA other downstream 3133047 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 3148510 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 3328105 6339995 ~ 6345403 (+)

Expression


Co-expression Network