hibch (hibch)


Basic Information

Item Value
gene id hibch
gene name hibch
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 4671132 ~ 4734221 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680077.1
GCCTCTCTGAGCACTCTGACCGGGCTCAGGGAGAGTTCAGACCCCGGCGTGCAGAAGCGCAGCAGCGGCTGAGTGGGAGATATCAGTACTTTCAGCTGAGCGATGGCTTTGAGGGTCTTAAAGACTGCATTGAGCCTGAGATCCGTCTACAGACTGCATAAGATACAAGCACACCTGATGTCCAGCAACGCAAGTCCTGAGGTTTTGTTTGAAAGAGTGGGGAATGCAGGCGTGATCATACTGAACCGACCCAAAGCTCTCAATGCGCTGACCCTCAATATGATCCGACATATTTACCCTCAGCTTAAGaaATGGGAGAGTGATTCAGAGACTAGTATTGTAATCATCAAGGGTGCTGGAGATAAAGCTTTCTGTGCTGGAGGAGACATTAGAGCTCTCTCAGATGCTGGGAAAGTAGGAGATCCTTTAGTAAAAGAGCTTTTCCGTGAGGAATACATTCTGAACAACGCTACAGGTACCTGTAAGAAGCCATATATAGCCCTCATCGATGGAATTACGATGGGAGGGGGTGTTGGCCTTTCGGTCCATGGGCGGTTTCGTGTGGCCACCGAGAAGACGCTGTTCGCCATGCCGGAGACTGCTATTGGGTTGTTCCCTGATGTCGGAGGTGGCTACTTCCTGCCGAGGCTCCAGGGAAAGCTGGGGCTGTTCCTGGCTCTGACCGGCTTCAGGCTGAGAGGCCGAGATGTTCAGAAAGCAGGGGTGGCCACACACTTTGTGGAGTCTGAGAAGATCGGCGCTCTTGAAAAGGACCTGGTGGACCTGAAGGTCCCCTCGGTCAGTGAAGTGGCTCAGGTCCTGGACTCCTATCACCAACAGAGCACCCTGGACGCTGAGAAGTCGTTCGTCCTGCAGCAGCACACTGAAGCTATTGACAGgcTCTTTACAGCCAGCAGTGTGGAGGAGATCATGGAGAACCTGCAGAAGGACGGCTCTGCTTTTGCTCAGAAGCAGTTAGAGATTTTGTCTAAGATGTCTCCAACGTCTCTGAAGCTGACCTTCAGACAGCAGCAGGCTGGAGCCACTATGACTCTTCAGGAAGTGTTTGTGATGGAGTACAGACTCACCCAGGCCTGTATGAGAGGGCATGACTTCTATGAGGGAGTAAGAGCGGTGATTATCGATAAGGACCAGAATCCTAAATGGAAGCCCCCGACTCTGGCTGAGGTCACGGAGGAGTTTATGGAAGAAAGCTTCAGATCACTGGGAGAGAGAGACCTGGTGTTTTGAGCACTGCTCTACTGCACCactctggagagagagagagaataagaacattttaagtgcatttttttcttcatcatccctgaaatttattaataaactacttTGCGCTGAGTCAGTGTTGAGGGGGAAAGTACAATGCTGAGTTCCTGAAGTGTACAAGGACCGAACCTTTTTTAGTGCTAGTCTTTCTGCTGGCTGCTA
>XM_022680078.1
CTGACCGGGCTCAGGGAGAGTTCAGACCCCGGCGTGCAGAAGCGCAGCAGCGGCTGAGTGGGAGATATCAGTACTTTCAGCTGAGCGATGGCTTTGAGGGTCTTAAAGACTGCATTGAGAAATCAAGATACATGAGACCAGGCTACTTTGTTCTTCCAGTCTTCAGCTGTCCAGTTTTGCCTGAGATCCGTCTACAGACTGCATAAGATACAAGCACACCTGATGTCCAGCAACGCAAGTCCTGAGGTTTTGTTTGAAAGAGTGGGGAATGCAGGCGTGATCATACTGAACCGACCCAAAGCTCTCAATGCGCTGACCCTCAATATGATCCGACATATTTACCCTCAGCTTAAGaaATGGGAGAGTGATTCAGAGACTAGTATTGTAATCATCAAGGGTGCTGGAGATAAAGCTTTCTGTGCTGGAGGAGACATTAGAGCTCTCTCAGATGCTGGGAAAGTAGGAGATCCTTTAGTAAAAGAGCTTTTCCGTGAGGAATACATTCTGAACAACGCTACAGGTACCTGTAAGAAGCCATATATAGCCCTCATCGATGGAATTACGATGGGAGGGGGTGTTGGCCTTTCGGTCCATGGGCGGTTTCGTGTGGCCACCGAGAAGACGCTGTTCGCCATGCCGGAGACTGCTATTGGGTTGTTCCCTGATGTCGGAGGTGGCTACTTCCTGCCGAGGCTCCAGGGAAAGCTGGGGCTGTTCCTGGCTCTGACCGGCTTCAGGCTGAGAGGCCGAGATGTTCAGAAAGCAGGGGTGGCCACACACTTTGTGGAGTCTGAGAAGATCGGCGCTCTTGAAAAGGACCTGGTGGACCTGAAGGTCCCCTCGGTCAGTGAAGTGGCTCAGGTCCTGGACTCCTATCACCAACAGAGCACCCTGGACGCTGAGAAGTCGTTCGTCCTGCAGCAGCACACTGAAGCTATTGACAGgcTCTTTACAGCCAGCAGTGTGGAGGAGATCATGGAGAACCTGCAGAAGGACGGCTCTGCTTTTGCTCAGAAGCAGTTAGAGATTTTGTCTAAGATGTCTCCAACGTCTCTGAAGCTGACCTTCAGACAGCAGCAGGCTGGAGCCACTATGACTCTTCAGGAAGTGTTTGTGATGGAGTACAGACTCACCCAGGCCTGTATGAGAGGGCATGACTTCTATGAGGGAGTAAGAGCGGTGATTATCGATAAGGACCAGAATCCTAAATGGAAGCCCCCGACTCTGGCTGAGGTCACGGAGGAGTTTATGGAAGAAAGCTTCAGATCACTGGGAGAGAGAGACCTGGTGTTTTGAGCACTGCTCTACTGCACCactctggagagagagagagaataagaacattttaagtgcatttttttcttcatcatccctgaaatttattaataaactacttTGCGCTGAGTCAGTGTTGAGGGGGAAAGTACAATGCTGAGTTCCTGAAGTGTACAAGGACCGAACCTTTTTTAGTGCTAGTCTTTCTGCTGGCTGCTA

Function

symbol description
hibch Predicted to enable 3-hydroxyisobutyryl-CoA hydrolase activity. Predicted to be involved in valine catabolic process. Predicted to act upstream of or within branched-chain amino acid catabolic process. Predicted to be active in mitochondrion. Orthologous to human HIBCH (3-hydroxyisobutyryl-CoA hydrolase).

NR:

description
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial-like

GO:

id name namespace
GO:0006574 valine catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity molecular_function

KEGG:

id description
K05605 HIBCH; 3-hydroxyisobutyryl-CoA hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680077.1 False 1449 mRNA 0.51 14 4671132 4734221
XM_022680078.1 True 1494 mRNA 0.50 15 4671147 4734221

Neighbor

gene id symbol gene type direction distance location
vwc2l vwc2l,LOC107660607 coding upstream 222512 4379022 ~ 4448620 (+)
LOC103033219 NA coding upstream 627539 4039986 ~ 4043593 (+)
cps1 cps1 coding upstream 1659242 2912007 ~ 3011890 (+)
map2 map2 coding upstream 1796066 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 2015418 2604058 ~ 2655714 (+)
mstn mstn coding downstream 22523 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 76327 4810548 ~ 4817692 (+)
osgepl1 osgepl1 coding downstream 88082 4822303 ~ 4827751 (+)
LOC103025618 LOC108436803 coding downstream 120182 4854403 ~ 4859014 (+)
slc40a1 slc40a1,LOC107660595,LOC107602151 coding downstream 138704 4872925 ~ 4887416 (+)
G164944 NA non-coding upstream 20239 4616803 ~ 4650893 (+)
G164910 NA non-coding upstream 167721 4501948 ~ 4503411 (+)
G164899 NA non-coding upstream 179423 4449979 ~ 4491709 (+)
G164907 NA non-coding upstream 216317 4452048 ~ 4454815 (+)
G164903 NA non-coding upstream 231412 4395312 ~ 4439720 (+)
G164990 NA non-coding downstream 159924 4894145 ~ 4896061 (+)
G165013 NA non-coding downstream 282513 5016734 ~ 5056807 (+)
G165015 NA non-coding downstream 291033 5025254 ~ 5026263 (+)
G165034 NA non-coding downstream 382694 5116915 ~ 5117115 (+)
G165053 NA non-coding downstream 571521 5305742 ~ 5306443 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 2178141 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 2833045 1802787 ~ 1838087 (+)
tspear tspear other upstream 2910572 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 3174752 1404101 ~ 1496380 (+)
G164126 NA other upstream 4098939 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 533818 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 1383143 6117364 ~ 6123051 (+)
G165406 NA other downstream 1410716 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 1426179 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 1605774 6339995 ~ 6345403 (+)

Expression


Co-expression Network