nr1i2


Basic Information

Item Value
gene id nr1i2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 5835481 ~ 5862907 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680108.1
atattgttaatattatattattattttatttataatgccGCTCTGCTCTGTCAACTAGTAGCCAATCAGGtggaggggcggggcttgtgTCTGAATACAGGTGGGAATAGTCAGGCGCAGCTGCTGGGCTCGCTCCGCTCAGCGCACCGCGGCTCGGGTCAGCAGAAGGTCGTCAGTAGCTCTGCGGTGCGAAGCTCAGTAAACCCACCAAAATGCGAGAAGCGGAGCTGCCGGTCCTCCTGCGGCTTTCAGGACACGAGTCGTGATGGCAGTGTTACTCCTGGACCTGAGAAACGAGACTAACAGAGCGTGTGTGAcatgGCCTCAGGATGAGTTCGGAGAGTGAGGCGCGGTCTCCCCTAGACGACTCTGAAGTGGAGGAAAGCTTCAGAGAAGAGCTAGAGGAAGATGACGAACCAAAAGTGTGTCAAGTGTGTGGAGACAAAGCTACTGGATACCACTTTAATGCCATGACATGTGAGGGCTGCAAGGGCTTCTTCAGGCGAGCCATGAAGGGGCCTGCCAAATTCCGCTGTCCGTTCCAGAACAATTGCCTCATCACGAAGAGCAACCGGCGCCAGTGCCAGTTCTGCCGGCTACAGAAGTGTCTCTCCATCGGCATGCTGAAAGAGTTGATTATGTCAGACGAGGCGGTGGAGAAACGGAGGATGCTGATTCGGAGGAAGAAGATGGCAGAAGATCCTGCTGTGCTCTCAGACCATCAAGAATCTGTAATTCAGGAGCTGCTAGAAGCACACAGGAAGACCTTTGACACAACCTTCTCTGACTGCCAGTTCCGGCCTTTAGACCGGGACCAGAACCCCATGTCTGAGTACTCTCTGAAGAACTCCTGCTCCCAGAACTCTCCTAACCTCATGGGTCCTGTGGAGCTCAGAAAACCGGTGGAGAGCTCCCTCCCTCAGGGGTCCTCTTCCTCCAGCTTCAGTAACTGTCAGGAGGCAGAGAAAAGcagcaagagagaaaaagcgTTCACCACGCTACCTCACATCACCGACCTCAGCACCTACATGATGCAGAACGTCATTAACTACGCAAAGATCCTCAAACCGTTCAGGGCTCTGACTATAGAAGACCAGATTTCGCTGCTGAAGGGTGCCATGTTCGAGATGGTACAGATGCGTTTCAACATGACATTCAACGAAAACACTGGGATATGGGAGTGTGGTCCGCTGAATTACTGCATGGATGATGCAGCGCGTGCTGGTTTTCAGCCCCACCTGCTGGACCCTCTGATGAAGTTTCATTACACACTACGCAGACTGCACTTAGATGAGAAGGAGTATGTGCTGATGCAGACGATCTCACTCTTCTCACCGGATCGTACAGGAGTGACGCAGAACGGTGCTGTTGATAAGTATCAGGAGCTGCTGGCCTGCACACTGAAGATCTATATGGAGTCTAAGCGAACCGGTCCAGAGAAATATTTGCTGTTTCCCAAGATCATGGCGTGCCTTACAGAAATGAGGACTATGAATGAGGAATACAACAAACAAGTGCTGCAGATTCAGGACATCCAGCCGGAGGTGTCTCCACTCATGCTAGAGATCGTCAGCCAGCACAGCTAACCCAACCCAACCTCCACTCTTCTCGCTCCTGCTGCCTCTCTCTACACCTCAAACCTCTACAGCGGAGGGTCAGGAGTTCACTTCACACTTTATCCGTGGATATTCAGTCAGGGCATTTTCATACCTAGATCCTCTAGAGTAGCTTTCTACCCTAAAGTGATTGCCTTTTCCTAATTTATGAGTTGGACAACCTGGAGCAGCATGATCCAAGCCAGATTAAGTGGGTGTGATAAAGAACCAATCTTTCAGTTTTAACAAATGCTAGGTGGTTTACCCTTTTCATGCCCCCCTGAGGAAATCCCTACCACTAATCTTAAAGCAGCTTTATGTGGGAATTGGTATTTTTTGCTCTTGGGCTCCCTCTACAGTTAGGAAATGGAATtggcacattttaaaatgacatgcttttcacatgcatttcagggcaagctgagagatacagaacagtTAGTGTAAGAAGGAAAAAACATGTGGACTATGTGGACTATGGAGGTCAAGTAATGTTATAAGATTTTGAACAAATATGACTTTAggcagagtaatgtagagttATGCAGTTTTCACAAACATTGCCCTGCCCACTTCctcaaagttacatagtgcagtcaGCAGAATGCCGAGCATAGAATGGCAAAGATAGAGATGCTGTTCTCCTAATTATCTAGTCAGTTGagcattaaaacaattaatatattttttgcactataaggtgcacttaaaaccgagtgcattagcattacctgct

Function

NR:

description
nuclear receptor subfamily 1 group I member 2

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG:

id description
K08540 NR1I2, PXR; pregnane X receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680108.1 True 2331 mRNA 0.48 9 5835481 5862907

Neighbor

gene id symbol gene type direction distance location
maats1 NA coding upstream 819 5801891 ~ 5834662 (+)
btla NA coding upstream 196543 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 398249 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 530372 5300599 ~ 5305109 (+)
LOC111194874 NA coding upstream 601842 5219361 ~ 5233639 (+)
LOC103026554 LOC108423842 coding downstream 426643 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 433279 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 765699 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 898444 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 975479 6838386 ~ 6884350 (+)
LOC111194876 NA non-coding upstream 72630 5747321 ~ 5762851 (+)
G165283 NA non-coding upstream 82029 5750683 ~ 5753452 (+)
LOC111194877 NA non-coding upstream 88204 5744902 ~ 5747277 (+)
G165273 NA non-coding upstream 105492 5712680 ~ 5729989 (+)
G165276 NA non-coding upstream 115507 5719045 ~ 5719974 (+)
G165316 NA non-coding downstream 2559 5865466 ~ 5868000 (+)
G165323 NA non-coding downstream 9334 5872241 ~ 5931151 (+)
G165326 NA non-coding downstream 14517 5877424 ~ 5878740 (+)
G165343 NA non-coding downstream 135120 5998027 ~ 6004101 (+)
LOC111194857 NA non-coding downstream 240281 6103188 ~ 6105756 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 536753 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3342490 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 3997394 1802787 ~ 1838087 (+)
tspear tspear other upstream 4074921 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 4339101 1404101 ~ 1496380 (+)
LOC107196936 NA other downstream 254457 6117364 ~ 6123051 (+)
G165406 NA other downstream 282030 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 297493 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 477088 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1522226 7385133 ~ 7485349 (+)

Expression


Co-expression Network