ccdc148


Basic Information

Item Value
gene id ccdc148
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6628606 ~ 6733187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680135.1
GGATCAGTCTCCTTGGTTACATTTTGTACACGAAGCGcgtgaagtgtttttttttcaatggcgGATTAGCTAAACAGCGTTTCCTGGGGTTGAAACAGCCCGCACATCTCCTGAATCAATCAAGATGCATTAAATCGTGACGTGGAGAGCCGTTCTGTTGTTTTTAACCACCTGTCACACTTCTTTCGGAGGCTGAGGTGAAAAGGAGATGAGTGGGAGGGACCTGCGTGCCTTCCTGGCGGGTCATCGGGCAGAGGACACAGAAAAGCTGACCCAGAGAGTGATGAACGAACTGGGCCTTTCCAAATATAAACCAGTTCAGTATGAGGAGCTTCAGGCCCTGGTGGAAGCAAAGAGACTCTCAACTGAGTGCATTGAGCACAAgGTGCAGCAGACTCTGCGTGCAGTTCAGGAGAGGAAACAGACCTGCCTGCTGCGCCAACACAGACAGGTGTGGACCTCTGAGAACCACAGACTGGACAAAGCCAGagagaaagcagagacAGATGTCAGGAGCTTCCTGGTTAGAAGCAGACTGGAGCATCGGGAGGATGGAGATGCCAGAGATGTCATGAGTGAGCTACTGGACTATGagctgCATTTGGAGGAGGAGCGTGATGCATTTAGATCGGCCACGGTACTTCCAGTCTGCCAATTGAAAGAGGACCTGCAATGGAGAATGACATCAGGACCTCCAGCAGCCAATCAACATGCAGAGTGGGAGGAAATCCTCCAGCAGGTGGTATTTGTGAAAGAACAGCAGCAGACACTGATGGACACACTAGAGGAGGAGGGTTTTTCACTTCAGCAGGAGCTTTCTGCTTATGGACTGCAGGCCAGTCTGGACACTGCCGCAGTGCAGGAGCATGCAGGTGCTCTGATGAAGGTGCCACAGGAGGTCCTGACCGCAGACTGCCCTTACACTGACCTCAAAATGTCTCTCATCAGTGCCTTTCATTCCCTCTCCGACAAATACACACAACAGCTGGACACAGTGCACAACAGACTTCAGGGCATGGACAGgaaCTGTGGGTGGAGTGAGCAGGACCACTTGCGTTTTCTGCACACTGTGAGTCAGTATAGACCCCAGCTGAGGAACCACAGAGGCCTGTGTCTGGACATGCTCCACAGAGTTCTACCCCACTACTCCACTGCAGAGCTGAACTCCCACGGGCGGAGCTGGGACTGGTACAGGTTCAGTGTGGAGCGTGAGAAGCTGCTGTTGGAGAGCTGGAGCAGGGACTGGACGGCACTGCTGCTCCGCGCTCTGGAGGTGCTGGAGGAGGCCAGAGCTGAACACGGAGAACAGCAGAACCTGCAGAAACATCGCACACACCAACAGCACATCTGTGCTCAGCTAAAACacaaggtgcagCAGTGGCGTGAGCGGCAGGAGGAAGTCGCTCGGCTGGAGGCAGCTGTGGCAGCTCgctgggaggaggaggagaaggaaagacagaaagaggagCAGGAAAGAGAGCAGACCAAGAGGAGCAGACAGAAACAgcggCTGCTTGAGTTTCATGAGgagcagaggaggaggagcatgAAGTGGCggaggagagaagaggagagactGGCACAGCTGAAGGGAGAGCTGGAGGAGCAGGCcaggagagataaagagagagtgcaGTTTAGGGAGAAGCTGCTGGAGCAGAAAAAGCAGGATCATGAAGCTAAAGAGCGTCTCAGacagaaagaggaagaggacagagaggagagactcaACAACCTACGCaaccagGTTGCTGTAGTGGCGGAGGCAGATCCAGAGAGAATGATGGGACAGACTGAAGCGTGGAGAGTCCGTCATCATCCTGACCAAGAAGAGTTTACACTGCAGAAACCCCTGTATcacttacacacttatacaGATACACAGatTGTGGCCGACCCACGTGTGCGTATAGAGCAGGCGCTCAGGACCGCAGGCCTCCATCACACACCTTACGCTAGAGCTCTCCTCTCAGAGATCCAGCCTCCAAAACCACCCCGACGAGACACACAGTCCACCGTCCTCAGGTCCTAACCTCAGAGTTCTGCACTCGTTAATGTACACACTGATAATTCAGctcagatcagcacagcagatCTGTTAATATTTCAACACAAATCAGCACGGCCCAGACATTCACCCCAAACAGCCACagtacagagacagacagatagatagatagatagatagatagatagatagatagatagatagatagatagataga
>XM_022680136.1
ACCATGATTTGGGTTTTCCTTGCAGCCAGTGACACAAGAAGCTTTTACTGTGAAAAGTAAAGAATGAATctagaagatgcaaagaggacgGCTTCTTCAGCAGAATAATGACCCAAACACCTCTAAAGCCACAATGGCCCACCTCAAGAGCGTTTCCTGGGGTTGAAACAGCCCGCACATCTCCTGAATCAATCAAGATGCATTAAATCGTGACGTGGAGAGCCGTTCTGTTGTTTTTAACCACCTGTCACACTTCTTTCGGAGGCTGAGGTGAAAAGGAGATGAGTGGGAGGGACCTGCGTGCCTTCCTGGCGGGTCATCGGGCAGAGGACACAGAAAAGCTGACCCAGAGAGTGATGAACGAACTGGGCCTTTCCAAATATAAACCAGTTCAGTATGAGGAGCTTCAGGCCCTGGTGGAAGCAAAGAGACTCTCAACTGAGTGCATTGAGCACAAgGTGCAGCAGACTCTGCGTGCAGTTCAGGAGAGGAAACAGACCTGCCTGCTGCGCCAACACAGACAGGTGTGGACCTCTGAGAACCACAGACTGGACAAAGCCAGagagaaagcagagacAGATGTCAGGAGCTTCCTGGTTAGAAGCAGACTGGAGCATCGGGAGGATGGAGATGCCAGAGATGTCATGAGTGAGCTACTGGACTATGagctgCATTTGGAGGAGGAGCGTGATGCATTTAGATCGGCCACGGTACTTCCAGTCTGCCAATTGAAAGAGGACCTGCAATGGAGAATGACATCAGGACCTCCAGCAGCCAATCAACATGCAGAGTGGGAGGAAATCCTCCAGCAGGTGGTATTTGTGAAAGAACAGCAGCAGACACTGATGGACACACTAGAGGAGGAGGGTTTTTCACTTCAGCAGGAGCTTTCTGCTTATGGACTGCAGGCCAGTCTGGACACTGCCGCAGTGCAGGAGCATGCAGGTGCTCTGATGAAGGTGCCACAGGAGGTCCTGACCGCAGACTGCCCTTACACTGACCTCAAAATGTCTCTCATCAGTGCCTTTCATTCCCTCTCCGACAAATACACACAACAGCTGGACACAGTGCACAACAGACTTCAGGGCATGGACAGgaaCTGTGGGTGGAGTGAGCAGGACCACTTGCGTTTTCTGCACACTGTGAGTCAGTATAGACCCCAGCTGAGGAACCACAGAGGCCTGTGTCTGGACATGCTCCACAGAGTTCTACCCCACTACTCCACTGCAGAGCTGAACTCCCACGGGCGGAGCTGGGACTGGTACAGGTTCAGTGTGGAGCGTGAGAAGCTGCTGTTGGAGAGCTGGAGCAGGGACTGGACGGCACTGCTGCTCCGCGCTCTGGAGGTGCTGGAGGAGGCCAGAGCTGAACACGGAGAACAGCAGAACCTGCAGAAACATCGCACACACCAACAGCACATCTGTGCTCAGCTAAAACacaaggtgcagCAGTGGCGTGAGCGGCAGGAGGAAGTCGCTCGGCTGGAGGCAGCTGTGGCAGCTCgctgggaggaggaggagaaggaaagacagaaagaggagCAGGAAAGAGAGCAGACCAAGAGGAGCAGACAGAAACAgcggCTGCTTGAGTTTCATGAGgagcagaggaggaggagcatgAAGTGGCggaggagagaagaggagagactGGCACAGCTGAAGGGAGAGCTGGAGGAGCAGGCcaggagagataaagagagagtgcaGTTTAGGGAGAAGCTGCTGGAGCAGAAAAAGCAGGATCATGAAGCTAAAGAGCGTCTCAGacagaaagaggaagaggacagagaggagagactcaACAACCTACGCaaccagGTTGCTGTAGTGGCGGAGGCAGATCCAGAGAGAATGATGGGACAGACTGAAGCGTGGAGAGTCCGTCATCATCCTGACCAAGAAGAGTTTACACTGCAGAAACCCCTGTATcacttacacacttatacaGATACACAGatTGTGGCCGACCCACGTGTGCGTATAGAGCAGGCGCTCAGGACCGCAGGCCTCCATCACACACCTTACGCTAGAGCTCTCCTCTCAGAGATCCAGCCTCCAAAACCACCCCGACGAGACACACAGTCCACCGTCCTCAGGTCCTAACCTCAGAGTTCTGCACTCGTTAATGTACACACTGATAATTCAGctcagatcagcacagcagatCTGTTAATATTTCAACACAAATCAGCACGGCCCAGACATTCACCCCAAACAGCCACagtacagagacagacagatagatagatagatagatagatagatagatagatagatagatagatagatagataga
>XM_022680137.1
gtgaagtgtttttttttcaatggcgGATTAGCTAAACAGGTGAAAAGGAGATGAGTGGGAGGGACCTGCGTGCCTTCCTGGCGGGTCATCGGGCAGAGGACACAGAAAAGCTGACCCAGAGAGTGATGAACGAACTGGGCCTTTCCAAATATAAACCAGTTCAGTATGAGGAGCTTCAGGCCCTGGTGGAAGCAAAGAGACTCTCAACTGAGTGCATTGAGCACAAgGTGCAGCAGACTCTGCGTGCAGTTCAGGAGAGGAAACAGACCTGCCTGCTGCGCCAACACAGACAGGTGTGGACCTCTGAGAACCACAGACTGGACAAAGCCAGagagaaagcagagacAGATGTCAGGAGCTTCCTGGTTAGAAGCAGACTGGAGCATCGGGAGGATGGAGATGCCAGAGATGTCATGAGTGAGCTACTGGACTATGagctgCATTTGGAGGAGGAGCGTGATGCATTTAGATCGGCCACGGTACTTCCAGTCTGCCAATTGAAAGAGGACCTGCAATGGAGAATGACATCAGGACCTCCAGCAGCCAATCAACATGCAGAGTGGGAGGAAATCCTCCAGCAGGTGGTATTTGTGAAAGAACAGCAGCAGACACTGATGGACACACTAGAGGAGGAGGGTTTTTCACTTCAGCAGGAGCTTTCTGCTTATGGACTGCAGGCCAGTCTGGACACTGCCGCAGTGCAGGAGCATGCAGGTGCTCTGATGAAGGTGCCACAGGAGGTCCTGACCGCAGACTGCCCTTACACTGACCTCAAAATGTCTCTCATCAGTGCCTTTCATTCCCTCTCCGACAAATACACACAACAGCTGGACACAGTGCACAACAGACTTCAGGGCATGGACAGgaaCTGTGGGTGGAGTGAGCAGGACCACTTGCGTTTTCTGCACACTGTGAGTCAGTATAGACCCCAGCTGAGGAACCACAGAGGCCTGTGTCTGGACATGCTCCACAGAGTTCTACCCCACTACTCCACTGCAGAGCTGAACTCCCACGGGCGGAGCTGGGACTGGTACAGGTTCAGTGTGGAGCGTGAGAAGCTGCTGTTGGAGAGCTGGAGCAGGGACTGGACGGCACTGCTGCTCCGCGCTCTGGAGGTGCTGGAGGAGGCCAGAGCTGAACACGGAGAACAGCAGAACCTGCAGAAACATCGCACACACCAACAGCACATCTGTGCTCAGCTAAAACacaaggtgcagCAGTGGCGTGAGCGGCAGGAGGAAGTCGCTCGGCTGGAGGCAGCTGTGGCAGCTCgctgggaggaggaggagaaggaaagacagaaagaggagCAGGAAAGAGAGCAGACCAAGAGGAGCAGACAGAAACAgcggCTGCTTGAGTTTCATGAGgagcagaggaggaggagcatgAAGTGGCggaggagagaagaggagagactGGCACAGCTGAAGGGAGAGCTGGAGGAGCAGGCcaggagagataaagagagagtgcaGTTTAGGGAGAAGCTGCTGGAGCAGAAAAAGCAGGATCATGAAGCTAAAGAGCGTCTCAGacagaaagaggaagaggacagagaggagagactcaACAACCTACGCaaccagGTTGCTGTAGTGGCGGAGGCAGATCCAGAGAGAATGATGGGACAGACTGAAGCGTGGAGAGTCCGTCATCATCCTGACCAAGAAGAGTTTACACTGCAGAAACCCCTGTATcacttacacacttatacaGATACACAGatTGTGGCCGACCCACGTGTGCGTATAGAGCAGGCGCTCAGGACCGCAGGCCTCCATCACACACCTTACGCTAGAGCTCTCCTCTCAGAGATCCAGCCTCCAAAACCACCCCGACGAGACACACAGTCCACCGTCCTCAGGTCCTAACCTCAGAGTTCTGCACTCGTTAATGTACACACTGATAATTCAGctcagatcagcacagcagatCTGTTAATATTTCAACACAAATCAGCACGGCCCAGACATTCACCCCAAACAGCCACagtacagagacagacagatagatagatagatagatagatagatagatagatagatagatagatagatagataga

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680135.1 False 2225 mRNA 0.52 16 6628606 6733187
XM_022680136.1 True 2298 mRNA 0.52 16 6630290 6733187
XM_022680137.1 False 2067 mRNA 0.53 15 6628644 6733187

Neighbor

gene id symbol gene type direction distance location
tmprss3 tmprss3 coding upstream 321278 6296186 ~ 6307328 (+)
LOC103026554 LOC108423842 coding upstream 334838 6289550 ~ 6293768 (+)
nr1i2 NA coding upstream 765699 5835481 ~ 5862907 (+)
maats1 NA coding upstream 793944 5801891 ~ 5834662 (+)
btla NA coding upstream 989668 5628989 ~ 5638938 (+)
LOC103030586 acvr1 coding downstream 28164 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 105199 6838386 ~ 6884350 (+)
LOC103026442 NA coding downstream 163447 6896634 ~ 6908752 (+)
LOC103041636 NA coding downstream 179925 6913112 ~ 6916257 (+)
nr4a2 nr4a2 coding downstream 376971 7110158 ~ 7118514 (+)
G165507 NA non-coding upstream 156881 6470766 ~ 6471725 (+)
G165494 NA non-coding upstream 185334 6443000 ~ 6443272 (+)
G165487 NA non-coding upstream 210357 6416344 ~ 6418249 (+)
LOC111194884 NA non-coding upstream 215668 6400494 ~ 6412938 (+)
G165484 NA non-coding upstream 239608 6388702 ~ 6388998 (+)
G165534 NA non-coding downstream 18225 6751412 ~ 6751783 (+)
G165530 NA non-coding downstream 152661 6885848 ~ 6890770 (+)
G165643 NA non-coding downstream 350814 7084001 ~ 7084301 (+)
G165648 NA non-coding downstream 439593 7172780 ~ 7173360 (+)
G165656 NA non-coding downstream 514547 7247734 ~ 7247939 (+)
wdr4 wdr4 other upstream 283203 6339995 ~ 6345403 (+)
LOC111194881 NA other upstream 390620 6160400 ~ 6237986 (+)
G165406 NA other upstream 482637 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 505555 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 1329878 5268039 ~ 5298728 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 651946 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 943599 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1296208 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2247375 8980562 ~ 9067879 (+)
G166015 NA other downstream 2305055 9038242 ~ 9085850 (+)

Expression


Co-expression Network