acvr1c (acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259)


Basic Information

Item Value
gene id acvr1c
gene name acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6838386 ~ 6884350 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680145.1
GCGTGGTATTAAGCGTGCAGTAATGCGGAGCGCGGCTGAGGGCAGCGGGACGGGGGAGGACGCTGGTGATGTGCTGATTTGTTTTGTGGGAGAAGCAGCCGCGTGCTATAGACCGCTGTGCGCGAGCGAGCGAGGACAGAGCCCGATGTAGGGCTGGACATGCGCGAGCTCAGGTGTCTCGGCGCCGGGGAGGCGCTGCTCGTGCTCGTGCTCGTGCTCATCCAGCTCGGTACAGctctaaagtgtgtgtgtcagcTGTGTGCGAATCACACCTGTGAGACGGAGGCTGAGGGAGCATGCTGGAACTCAGTGATGCTGATCAACGGGAAGGAAGAGGCTGTGAAGTCCTGCCTCTCTCCCAGCGAGCTGAAGGGCCAGGTGTTCTGCTACAGCTCCAGAAACGTCTCCAAACGCAACTGCTGCTTCACCGACTTCTGCAACAACGAGACTCTTCACCTCTACCCACAAACCGCGTCAGACGGTTCGAGCTGGGGCCGACTGGAGCTGGCGGCTGTGATCCTGGTGCCGTCGTGCCTGCTGTGCGTGGGTGTGGTTCTGAGTCTGTGTGCTCTTCAGAATCAGAGGTGTGTTCACAGTAAAGCTCGTAAACAGGACCCAGAGGAACCGCTCGACGACCAGAGTCTCGTCTCACCTGAAAAATGCCTGAAAGAACTCATCTTTGATATGAGCACATCTGGCTCTGGATCAGGATTGCCGCTTCTGGTACAGAGGACGATAGCGCGGACCATCGTTCTCCAGGAGAGCATTGGGAAGGGCCGGTTTGGAGAGGTGTGGAGGGGGAAGTGGAGGGGCGAGGACGTGGCTGTGAAGATTTTCTCCTCTCGAGACGAGCGCTCCTGGTTCCGTGAGGCCGAAATGTATCAGACCATCATGCTGAGGCACGAAAACATCCTAGGCTTCATTGCAGCTGATAATAAAGatAATGGTTCATGGACTCAGCTGTGGCTGGTGTCGGAGTACCATGAGCACGGCTCTCTGTTTGATTACCTGAACAGGTATACAGTGTCTGTGGACGGTATGATTGTCCTGGCGCTGTCCATCGCCAGCGGCCTGGCTCATCTGCACATGGAGATCATCGGCACTCAAGgaaAGCCTGCCATTGCTCACAGAGATATAAAATCCAAGAATATCTTGGTGAAGAAGAACGGGACAGCAGTGATTGCTGACCTGGGGCTCGCAGTCAAACACGACTCCAACTCCAACGCCATTGACATCCCAGTCAACCACAGAGTGGGCACCAAGAGGTACATGGCTCCTGAGATTCTGGATGACACCATTAACATGAACAGCTTTGAGTCGTTTAAGCGGGCGGATATCTACTCTCTGGGGCTGGTGTTCTGGGAGCTGGCCCGGAGGTGCTCTGTTCGAGGGATTCACGAAGATTTCCAGCTGCCTTATTTTGACCAGGTGCCTTCAGACCCCTCCGTGGAGGACATGAGGAGGGTGGTGTGTGATCAGAAACTGAGACCCAGCATCCCCAACCAGTGGCAGAGCTGTGAGgCCCTACGAGTAATGGGGAAGATCATGAGGGAGTGTTGGTATGCCAACTCTGCTGCTCGCCTTACAGCTCTGCGTGTGAAGAAGACCCTCTCTCAGGTGACTGTCATCAAGGATGTTAAAGAGTAGTCTTATGACCTTGGAGTGACCCCTCCATCACTGATCAGGGGACCACATTGTAAAGACGTTTCTGAACGCTCTGTCTGTGATGCCAAAGAACCCTAGTGTCTAGCAGTGACGCATCCGCGGTGAAGTGTCTGACTGCAATGGGATTATCCAGCTGCTGAGAGCAGGTCTGTTCTCAGAACTGTTTCAGTGACAGCGTGAAGGTGCAGGGGGTATATCTCCGCACTCGTGAATGAGCACTAATTCAGTCATTACCTGGCTGTTTTCTTAAACACTACCTCTCCCCCCCCCTCCACTCCAGATAGCTCTCCTCAACATCCTTCATCTCTTCTTCTGTCAGCACTCCTCTTTATCTCTCATCTGCCCTTTTCTCACTTCCCCCTCCTCCAGCTGCTTCACCTAAACTGTAGCAGTACTAGGACAGGCTGCAAGGaaatgtt

Function

symbol description
acvr1c Is expressed in heart.

NR:

description
PREDICTED: activin receptor type-1C

GO: NA

KEGG:

id description
K13568 ACVR1C, ALK7; activin receptor type-1C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680145.1 True 2084 mRNA 0.54 9 6838386 6884350

Neighbor

gene id symbol gene type direction distance location
LOC103030586 acvr1 coding upstream 5830 6761351 ~ 6832556 (+)
ccdc148 NA coding upstream 105199 6628606 ~ 6733187 (+)
tmprss3 tmprss3 coding upstream 531058 6296186 ~ 6307328 (+)
LOC103026554 LOC108423842 coding upstream 544618 6289550 ~ 6293768 (+)
nr1i2 NA coding upstream 975479 5835481 ~ 5862907 (+)
LOC103026442 NA coding downstream 12284 6896634 ~ 6908752 (+)
LOC103041636 NA coding downstream 28762 6913112 ~ 6916257 (+)
nr4a2 nr4a2 coding downstream 225808 7110158 ~ 7118514 (+)
LOC103038369 fam126b coding downstream 419235 7303585 ~ 7376769 (+)
LOC103040445 LOC108423859,LOC108266542,LOC104925869,LOC103392445 coding downstream 603068 7487418 ~ 7490552 (+)
G165534 NA non-coding upstream 86603 6751412 ~ 6751783 (+)
G165523 upp2,LOC107699962 non-coding upstream 96585 6664247 ~ 6741801 (+)
G165507 NA non-coding upstream 366661 6470766 ~ 6471725 (+)
G165494 NA non-coding upstream 395114 6443000 ~ 6443272 (+)
G165487 NA non-coding upstream 420137 6416344 ~ 6418249 (+)
G165530 NA non-coding downstream 1498 6885848 ~ 6890770 (+)
G165643 NA non-coding downstream 199651 7084001 ~ 7084301 (+)
G165648 NA non-coding downstream 288430 7172780 ~ 7173360 (+)
G165656 NA non-coding downstream 363384 7247734 ~ 7247939 (+)
G165688 NA non-coding downstream 610291 7494641 ~ 7535072 (+)
wdr4 wdr4 other upstream 492983 6339995 ~ 6345403 (+)
LOC111194881 NA other upstream 600400 6160400 ~ 6237986 (+)
G165406 NA other upstream 692417 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 715335 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 1539658 5268039 ~ 5298728 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 500783 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 792436 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1145045 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2096212 8980562 ~ 9067879 (+)
G166015 NA other downstream 2153892 9038242 ~ 9085850 (+)

Expression


Co-expression Network