LOC111194887


Basic Information

Item Value
gene id LOC111194887
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 8029395 ~ 8034584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680168.1
CAGGTTTCATGTCGAAAGCGAAAGCAGCTGTGGTTCGGAGCAGCTGTGGTTCGGAGCAGCTGGAGGACAGAGGAGAAAGCGGGCGAGATCATCAGCGAATATAAAAGaataAATGGATTTCAAAGCCATTGTCAAGCGTAACAAACCAGATCTGATCAAATGGCTGCACGGGAATTATATAGTTCTACAATATGTAGATTCACAGGAAATTATATCATCCACTGAATATAAAAACCTGAAGATAATTGACAATTATGATGAAAAGAATACAATGCTCCTGGATATGATCTGGGATAAAGGACAGGACTCTTGCCggaattttttaaatgtactgaaGAAGGGTGATGTGAACGAGTCAAGCCCAGATCTCCAGAGATGGATATCCACTGTGGACACCTCTGATACCTCAGcaacaaGTGTCCAGACTCCAGTGGCCGGTGTCTCAACCTCAGCAAACAGCTCCACCTCTCCTGCTGGGAATCAGACAATTGCAGATAAAAAGGAGTTCCTGAAGACAAAACGaagtgaattaataaataaagtcaaaAATGTGGATGCAATTGCAGATGACCTCAACCTGACAAATGAAATGAGATCTATTGTGGAAGCTCAACCAACTGACCATGCCAAAATGAGGAAAGTGCTGGAATTTACAAACAGCACCAAAGCAACTGAGCTTCTGATCGATGCCTTGTGGAAGCATGCAGGTGACATCATGGAGGACCTGACCAGTGAAGCCTAATGTGGCGTATAAACAGCAGGTCCTGTGAGTTATGAAATGACCAAATAAGGCATtatgttagatttttttagtttgattacatgattttttacattcctTTTATTAACATGGATGAGGGGAGCATTATTAAGATATTCTGTAGATTGATAGCATGCATTGATTATGTTGAGGGACTAATTTTTACACCAAAATTTGTTGTTTTACCCATTTGTTCAGGGACATTCACAGATGCTGAATTTAGATTTTATACTTCCCTTAATACTGCCTGACTTCAGAGCACTTGAGCCTTATTTATTGCTGTAGTTGAAGGTTTTATATGAATGGTCAGttctttttaatgaaaatgtcatttttataaCAAACATTTACTTGTAATTACCTGTTATCAGACATTAACTTTGGGGAGTGTTAGGGATGTATTTAGAATGATAAATACATGAAACAAAACCTCAAATACTATACAAATCAACACAATACTATATTATAGAATgaatcatggctaaattgagactgttacagtagttttgTGGATTGCCTCATTGTTTCTATACCACCTACATTAGATTTTGATTTATTTCCAGTGAACTCCTAGACACATTTGAGATTTTTGACTCCTAGGAGTtacatgtaataataataaaaaaatcaaagtagAACAAGAATATATGCTTATCTCAGGCCTAATTACATAATGTAAAATGGCATGTGGGATGCTTACAACATACATAAAATGGACAGCCTGACCAGTGAAGCTTAGTGTGGCATTTAAAACATCTGTTACTTCAGGGATAGCAGGTCCTGTAAATTATGAAATGATCAAATTAGAATCATGTGAGATTATTTTTCTCCGACTCTAAtgttattttggtgtgttttataCATTATTCTTATATTACCTACATTCCACagacattgttttttatatattttttaaattaactacTTATGGATCAGGAGAACATTACCAAGGCAGCTTCTATTTAAATAGATAGCATAGAAGCATCTGTTAAAATGTGCAGAACTTAATTTTTATACAAAGCTTGTTCAGgggtatagttttttttgtttttgtttttttacctcTGTATGCTTATGTCTTACATTGACTTTGGAATGtatttttatcatcatttttacaaTAAGCCTGTGGCAATTACCTGTGTTATTAACAAACGTTAATTGTGATTGGCGGGAATGTGGGAGAGCCATGGAAAAACAAGCTTTATTGAATGGTAAATAAATTTATCAAAACTGA
>XR_002651338.1
CAGGTTTCATGTCGAAAGCGAAAGCAGCTGTGGTTCGGAGCAGCTGTGGTTCGGAGCAGCTGGAGGACAGAGGAGAAAGCGGGCGAGATCATCAGCGAATATAAAAGaataAATGGATTTCAAAGCCATTGTCAAGCGTAACAAACCAGATCTGATCAAATGGCTGCACGGGAATTATATAGTTCTACAATATGTAGATTCACAGGAAATTATATCATCCACTGAATATAAAAACCTGAAGATAATTGACAATTATGATGAAAAGAATACAATGCTCCTGGATATGATCTGGGATAAAGGACAGGACTCTTGCCggaattttttaaatgtactgaaGAAGGGTGATGTGAACGAGTCAAGCCCAGATCTCCAGAGATGGATATCCACTGTGGACACCTCTGATACCTCAGcaacaaGTGTCCAGACTCCAGTGGCCGGTGTCTCAACCTCAGGTAGGGTTGTGAATATTCAAGCCGATGGTGCCAGTCATGTTGTTGCCCCCCTAATATTTAACTCAAATACGGGTGGCATCAATATAACTGTGaataaaccaaacaaataaGGATTGATGAAAAACGTCACATAATCAATgCAAACAGCTCCACCTCTCCTGCTGGGAATCAGACAATTGCAGATAAAAAGGAGTTCCTGAAGACAAAACGaagtgaattaataaataaagtcaaaAATGTGGATGCAATTGCAGATGACCTCAACCTGACAAATGAAATGAGATCTATTGTGGAAGCTCAACCAACTGACCATGCCAAAATGAGGAAAGTGCTGGAATTTACAAACAGCACCAAAGCAACTGAGCTTCTGATCGATGCCTTGTGGAAGCATGCAGGTGACATCATGGAGGACCTGACCAGTGAAGCCTAATGTGGCGTATAAACAGCAGGTCCTGTGAGTTATGAAATGACCAAATAAGGCATtatgttagatttttttagtttgattacatgattttttacattcctTTTATTAACATGGATGAGGGGAGCATTATTAAGATATTCTGTAGATTGATAGCATGCATTGATTATGTTGAGGGACTAATTTTTACACCAAAATTTGTTGTTTTACCCATTTGTTCAGGGACATTCACAGATGCTGAATTTAGATTTTATACTTCCCTTAATACTGCCTGACTTCAGAGCACTTGAGCCTTATTTATTGCTGTAGTTGAAGGTTTTATATGAATGGTCAGttctttttaatgaaaatgtcatttttataaCAAACATTTACTTGTAATTACCTGTTATCAGACATTAACTTTGGGGAGTGTTAGGGATGTATTTAGAATGATAAATACATGAAACAAAACCTCAAATACTATACAAATCAACACAATACTATATTATAGAATgaatcatggctaaattgagactgttacagtagttttgTGGATTGCCTCATTGTTTCTATACCACCTACATTAGATTTTGATTTATTTCCAGTGAACTCCTAGACACATTTGAGATTTTTGACTCCTAGGAGTtacatgtaataataataaaaaaatcaaagtagAACAAGAATATATGCTTATCTCAGGCCTAATTACATAATGTAAAATGGCATGTGGGATGCTTACAACATACATAAAATGGACAGCCTGACCAGTGAAGCTTAGTGTGGCATTTAAAACATCTGTTACTTCAGGGATAGCAGGTCCTGTAAATTATGAAATGATCAAATTAGAATCATGTGAGATTATTTTTCTCCGACTCTAAtgttattttggtgtgttttataCATTATTCTTATATTACCTACATTCCACagacattgttttttatatattttttaaattaactacTTATGGATCAGGAGAACATTACCAAGGCAGCTTCTATTTAAATAGATAGCATAGAAGCATCTGTTAAAATGTGCAGAACTTAATTTTTATACAAAGCTTGTTCAGgggtatagttttttttgtttttgtttttttacctcTGTATGCTTATGTCTTACATTGACTTTGGAATGtatttttatcatcatttttacaaTAAGCCTGTGGCAATTACCTGTGTTATTAACAAACGTTAATTGTGATTGGCGGGAATGTGGGAGAGCCATGGAAAAACAAGCTTTATTGAATGGTAAATAAATTTATCAAAACTGA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680168.1 False 1997 mRNA 0.35 5 8029395 8034584
XR_002651338.1 True 2137 misc_RNA 0.36 6 8029395 8034584

Neighbor

gene id symbol gene type direction distance location
LOC103036074 LOC103036074,LOC108423860,LOC107660577,LOC108266225,LOC107714364,LOC107728914,LOC107714365,LOC107602160,LOC107584166 coding upstream 112178 7910008 ~ 7917217 (+)
LOC103036377 pcbp3,LOC108423908,LOC107728912,LOC107660579,LOC107657516,LOC102308458,LOC106920547,LOC108266078,LOC106581674 coding upstream 160890 7754863 ~ 7868505 (+)
LOC103040141 ctds1,ctdsp1,LOC108423903,LOC107714388,LOC107660585,LOC107602156,LOC107657521,LOC103359966 coding upstream 491315 7495151 ~ 7538080 (+)
LOC103040445 LOC108423859,LOC108266542,LOC104925869,LOC103392445 coding upstream 538843 7487418 ~ 7490552 (+)
LOC103038369 fam126b coding upstream 652626 7303585 ~ 7376769 (+)
LOC103039823 LOC108423915 coding downstream 14511 8049095 ~ 8067885 (+)
LOC103033948 march4,LOC105020038 coding downstream 48775 8083359 ~ 8109692 (+)
LOC103039517 NA coding downstream 100474 8135058 ~ 8143255 (+)
LOC103023018 tns1 coding downstream 264141 8298725 ~ 8657757 (+)
LOC103025110 cx43.4,LOC108423927,LOC107741582,LOC107704825 coding downstream 1288752 9323336 ~ 9331783 (+)
G165809 NA non-coding upstream 66225 7962969 ~ 7963170 (+)
G165787 NA non-coding upstream 164906 7862997 ~ 7864489 (+)
G165687 NA non-coding upstream 434770 7594222 ~ 7594625 (+)
G165718 NA non-coding upstream 435211 7593647 ~ 7594184 (+)
G165688 NA non-coding upstream 494323 7494641 ~ 7535072 (+)
G165814 dal1b,LOC108423913 non-coding downstream 3301 8037885 ~ 8043080 (+)
G165856 NA non-coding downstream 79023 8113607 ~ 8113917 (+)
G165882 NA non-coding downstream 190779 8225363 ~ 8278604 (+)
G165885 NA non-coding downstream 206322 8240906 ~ 8242288 (+)
G165942 NA non-coding downstream 305965 8340549 ~ 8437352 (+)
LOC103036674 col18a1,LOC108423906 other upstream 287167 7676786 ~ 7742228 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other upstream 544046 7385133 ~ 7485349 (+)
wdr4 wdr4 other upstream 1683992 6339995 ~ 6345403 (+)
LOC111194881 NA other upstream 1791409 6160400 ~ 6237986 (+)
G165406 NA other upstream 1883426 6144937 ~ 6145969 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 945978 8980562 ~ 9067879 (+)
G166015 NA other downstream 1003658 9038242 ~ 9085850 (+)
LOC103024790 LOC103024790 other downstream 1102035 9136619 ~ 9148577 (+)
G166177 adarb1,adarb1b,LOC108266805,LOC105907970 other downstream 1793359 9827943 ~ 9837292 (+)
G166294 NA other downstream 2392682 10427266 ~ 10429912 (+)

Expression


Co-expression Network