G56100


Basic Information

Item Value
gene id G56100
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9129300 ~ 9130286 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU63847
TGCTGTCCCCTCAAAATAACTAGGCACCCTCAGCTTCTTTAGCAAGGCAGTGGTCGTCTTGGAGGTGTGTTTGGGGTCGTTATCATGTTGGAATACTGCCCTGCGGCCCAGTCTCTGAAGGGAGGGGATCATGCTCTGCTTCAGTATGTCACAGTACATGTTGGCATTCATGGTTCCCTCAATGAACTGTAGCTCCCCAGTGCCGGCAGCACTCATGCAGCCCCAGACCATGACACTCCCACCACCATGCTTGACTGTAGGCAAGACACACGTCTTTGTACTCCTCACCTGGTTACCGCCACACACACTTGACACCATCTGAACCAAATAAGTTTATCTTGGTCTCATCAGACCACAGGACATGGTTCCAGTAATCCATGTTCTTAGTCTGCTTGTCTTCAGCAAACTGTTTGCAGGCTTTCTTGTGCATCATCTTTAGAAGAGGCTTCCTTCTGGGACGACAGCCATGCAGACCAATTTGATGCAGTGTGCGGCATATGGTCTGAGCATTGACAGGCTGACCCCCCACCCCTTCAACCTCTGCAGCAATGCTGGCAGCACTCATACGTCTATTTCCCAAACACAACCTCTGGATATGACACTGAGCATGTGCACTCAACTTCTTTGGTCGACCATGGCGAGGCCTGTTCTGAGTGGAACCTGTCCTGTTAAACCGCTGTATGGTCTTGGCCACCGTGCTGCAGCTCAGTTTCAGGGTCTTGGCAATCTTCTTATAGCCTACGCCATCTTTATGTAGAGCAACAATTCTTTTTTTCAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGAGTGAGAGCGATAACACCAAATTTAACAAACCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63847 True 874 TUCP 0.50 2 9129300 9130286

Neighbor

gene id symbol gene type direction distance location
CI01000009_08955749_09012630 NEB coding upstream 116217 8954503 ~ 9013083 (+)
CI01000009_08940709_08944557 ARL5A.S, ARL5A, ARL5B coding upstream 184743 8940443 ~ 8944557 (+)
CI01000009_08899091_08928547 NA coding upstream 200449 8897170 ~ 8928851 (+)
CI01000009_08863308_08868625 RND3B, RND3 coding upstream 260176 8863308 ~ 8869124 (+)
CI01000009_08822338_08830986 LYPD6 coding upstream 296850 8822338 ~ 8832450 (+)
CI01000009_09212210_09214607 NA coding downstream 81645 9211931 ~ 9215286 (+)
CI01000009_09274252_09275727 CRYGM3 coding downstream 143966 9274252 ~ 9275764 (+)
CI01000009_09277694_09278311 CRYGM5 coding downstream 147408 9277694 ~ 9278510 (+)
CI01000009_09283776_09284378 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2A, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 153130 9283416 ~ 9284393 (+)
CI01000009_09288599_09289209 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2D13, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 158313 9288599 ~ 9289224 (+)
G56093 NA non-coding upstream 39143 9089659 ~ 9090157 (+)
G56073 NA non-coding upstream 94656 9033839 ~ 9034644 (+)
G56071 NA non-coding upstream 95897 9033092 ~ 9033403 (+)
G56070 NA non-coding upstream 96507 9032201 ~ 9032793 (+)
G56001 NA non-coding upstream 179723 8947502 ~ 8949577 (+)
G56113 NA non-coding downstream 13854 9144140 ~ 9170427 (+)
G56168 NA non-coding downstream 98887 9229173 ~ 9229646 (+)
G56169 NA non-coding downstream 101045 9231331 ~ 9231772 (+)
G56170 NA non-coding downstream 102295 9232581 ~ 9232881 (+)
G56171 NA non-coding downstream 104257 9234543 ~ 9234776 (+)
G53651 NA other upstream 2880908 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 3196499 5931718 ~ 5943899 (+)
G53388 NA other upstream 3590246 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 5920316 3202207 ~ 3208984 (+)
G51529 NA other upstream 6066713 3062033 ~ 3062587 (+)
CI01000009_09853929_09854476 SAP18 other downstream 723073 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 2630500 11761606 ~ 11766944 (+)
G57811 NA other downstream 2803656 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 3302272 12432538 ~ 12436017 (+)
G57682 NA other downstream 3695183 12825469 ~ 12892339 (+)

Expression


Co-expression Network