G56172


Basic Information

Item Value
gene id G56172
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9238654 ~ 9243730 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU63928
AGAGCGTGGACAGAGTGCAGGTAAGTGATGGCAGATGAATGGATCGCTGAGCAGATGAACTGGAACGGATACTTGTCTGTATGTTCTTTAGGAAGCGTGGATGCCAGGAGACGTGGAACAGATGACACACCGGAGAAACACAGGAGACGAGGAGACACTGGGAATCACTGAGGACGCTGGAGACAGGTAAGTAGAGAGCAAGGGAGTCCAGGAGGTAAGTGAACACGGGTTAGTGTTAACGAGACCGGACAGTGACTGAGTGAACTGGCGTGTCTTTTATGTGGCAGTGGTGATGAGTGTGGATTGGCGTCAGGTGTGGCTTGTCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63928 True 328 lncRNA 0.52 2 9238654 9243730

Neighbor

gene id symbol gene type direction distance location
CI01000009_09212210_09214607 NA coding upstream 23368 9211931 ~ 9215286 (+)
CI01000009_08955749_09012630 NEB coding upstream 225571 8954503 ~ 9013083 (+)
CI01000009_08940709_08944557 ARL5A.S, ARL5A, ARL5B coding upstream 294097 8940443 ~ 8944557 (+)
CI01000009_08899091_08928547 NA coding upstream 309803 8897170 ~ 8928851 (+)
CI01000009_08863308_08868625 RND3B, RND3 coding upstream 369530 8863308 ~ 8869124 (+)
CI01000009_09274252_09275727 CRYGM3 coding downstream 30522 9274252 ~ 9275764 (+)
CI01000009_09277694_09278311 CRYGM5 coding downstream 33964 9277694 ~ 9278510 (+)
CI01000009_09283776_09284378 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2A, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 39686 9283416 ~ 9284393 (+)
CI01000009_09288599_09289209 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2D13, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 44869 9288599 ~ 9289224 (+)
CI01000009_09291857_09292464 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2A, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D8, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding downstream 48127 9291857 ~ 9292464 (+)
G56171 NA non-coding upstream 3878 9234543 ~ 9234776 (+)
G56170 NA non-coding upstream 5773 9232581 ~ 9232881 (+)
G56169 NA non-coding upstream 6882 9231331 ~ 9231772 (+)
G56168 NA non-coding upstream 9008 9229173 ~ 9229646 (+)
G56113 NA non-coding upstream 68227 9144140 ~ 9170427 (+)
G56175 NA non-coding downstream 2999 9246729 ~ 9248371 (+)
G56183 NA non-coding downstream 15591 9259321 ~ 9260057 (+)
G56220 NA non-coding downstream 119585 9363315 ~ 9363544 (+)
G56225 NA non-coding downstream 135855 9379585 ~ 9379794 (+)
G56204 NA non-coding downstream 238364 9482094 ~ 9483970 (+)
G56100 NA other upstream 108368 9129300 ~ 9130286 (+)
G53651 NA other upstream 2990262 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 3305853 5931718 ~ 5943899 (+)
G53388 NA other upstream 3699600 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 6029670 3202207 ~ 3208984 (+)
CI01000009_09853929_09854476 SAP18 other downstream 609629 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 2517056 11761606 ~ 11766944 (+)
G57811 NA other downstream 2690212 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 3188828 12432538 ~ 12436017 (+)
G57682 NA other downstream 3581739 12825469 ~ 12892339 (+)

Expression


Co-expression Network