LOC103026554 (LOC108423842)


Basic Information

Item Value
gene id LOC103026554
gene name LOC108423842
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6289550 ~ 6293768 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680652.1
ATGGGGAAAGACGCAGGCCTTCCTCTGGATCAGGCAACCCGACTGAGGCACATGTGGCTGCTGTCAATCAAAGAATCCAAGCTGAAAGAACAAGAAAGACCAGCCAGCATACACCAGCTTCTCTACTGCCGTGTCGGGATTGGTTATCACCTACAGATCCTGACTGATGGGAGTGTAGGGGGAGTTCATGAGGCAACTGAGCACAGCTGGTTGAAGTTGTTTGCCATGAAACATGGAGTGGTGGGCATTCGTGGCGTCAAAAGCAAGCTGTATTTATGCATGAATAAAGAAGGAATTGCACAAGGGAAGAAGCAGTTTTCATCTGAATGCCTGTTCAAAGAACACCTGGAGGAGAACCACTATACAACATATTCATCTGCAGCACACCCAGGCCTGTACCTGGCCCTGTCCCACCGGGGGAAACTTAGGAGAGGAAACACAGTGGGACCACATCAGACCTGTACCCACTTCCTGCCACGCAAGGCCCTGAAAACCGAAGAATAAAAGCACTTTACCATGCAATAAAGGAAGATTTAAATTCTTAAGTTTGGCCTAAAGATAAAAGCACATATATAGTGTACTAATGTCACCATGCTCAATGCCAAGCGTCAGCTAGAGGGGTACATTggatgtggagcagtggaactggttctctggagtaatgaagctccatccagtacctttgggatgagttggagtgtCATGTCATACAACATCAGCATCTGACTTCACTATCTGTATATTGTCCTATGGAaccttacacacttacacattaaCCTACCACATGGGAAGATACCCAGAGTGAGTATCCAGAGGAAGCCCACACAGAACCCACAGCCCAAAGCCCATGGAGCTGTGCCACATACACACTACCTCCGGAGTGACGAAACTCAATACAACATCTATGAAATATTCTGTTCTGATGTTTTTGTGATTCAGAACTAAACATCCAAAATCAGTACCTGAACTCACGAATGctcttgtggctgaatgcaaacaaatccttacagcaatgtttCATCTTTTAGCGTAAAGAGTAGCGGACAATGTCCTTTCACAACCCTTGATTTCACCAGAAATCTACAAACCTTTGGACAGAATAAGCATGTGCACACATATAGAAGCACATCTTTGatataaaagttactttatgaaAGTTAATGTAAATAAGGCCCTCTTATTTACAGTgtgtataataattttatttaatatgcatatttatgtatttatttacatatttctttatttaaattcatttcAATAAATCTAATTTTATTTGCAATGATTTTCACTTTGGATTATTTTCTGGGTTTTAttaaaaagcacacaaacaaacatgaaGAATGAAGAAAGTTCAATACAGGCCCCTTTAAATAAGACATGAAAGGAAAACCACAGGCCTCTCCTATGACAGCAGCTCAGACAACACAAATGATCATTGAATTGCGGCTCATACCCATCTATTAACATAGAGCAGGCCTCTAAAATCTCCTCTTcagagtattattattatct

Function

NR:

description
PREDICTED: fibroblast growth factor 4A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680652.1 True 1515 mRNA 0.41 4 6289550 6293768

Neighbor

gene id symbol gene type direction distance location
nr1i2 NA coding upstream 426643 5835481 ~ 5862907 (+)
maats1 NA coding upstream 454888 5801891 ~ 5834662 (+)
btla NA coding upstream 650612 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 852318 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 984441 5300599 ~ 5305109 (+)
tmprss3 tmprss3 coding downstream 2418 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 334838 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 467583 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 544618 6838386 ~ 6884350 (+)
LOC103026442 NA coding downstream 602866 6896634 ~ 6908752 (+)
G165450 NA non-coding upstream 42042 6247265 ~ 6247508 (+)
G165432 NA non-coding upstream 43910 6245251 ~ 6245640 (+)
G165418 NA non-coding upstream 45635 6243527 ~ 6243915 (+)
LOC111188246 NA non-coding upstream 46334 6241844 ~ 6243216 (+)
G165426 NA non-coding upstream 97134 6190802 ~ 6192416 (+)
G165469 NA non-coding downstream 25551 6319319 ~ 6325758 (+)
G165474 NA non-coding downstream 54235 6348003 ~ 6348651 (+)
G165484 NA non-coding downstream 94934 6388702 ~ 6388998 (+)
LOC111194884 NA non-coding downstream 106726 6400494 ~ 6412938 (+)
G165487 NA non-coding downstream 122576 6416344 ~ 6418249 (+)
LOC111194881 NA other upstream 51564 6160400 ~ 6237986 (+)
G165406 NA other upstream 143581 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 166499 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 990822 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3796559 2490044 ~ 2492991 (+)
wdr4 wdr4 other downstream 46227 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1091365 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1383018 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1735627 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2686794 8980562 ~ 9067879 (+)

Expression


Co-expression Network