LOC111194857


Basic Information

Item Value
gene id LOC111194857
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6103188 ~ 6105756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651307.1
GCGCGAGGTCGAGGCGCGTGAAGTGTAATATCAGTGTTGTgtccattaaacacaaacaaacacatttaactcCACAAAAATAATCTACAGTCTGTCTTTACTAGTTCTGTACAGTTCAAACACTGATTTCTAGATTACCCGCGGAGAGTTAGATtactgcagagagctgctgagAAATGACTCCAGGCAAGGACATCAGCTACAGCGGACCAGCCATCATTCATAAAACACCACAAAACAGACATTGGAGTATTGCTgtgtggatttgattgcatgTAACAACAAGCATGAGATGATCCCCCATCTCatctcaaaagtattggatgaagcTCCATCTTTCCAGAGAACCAGAGCTCAATACTGGGAAATGCATTGTGCCAGTTGTTTTGTGTTCATGTGCTCCAAAGAGTCCTATTTTATTGCCAATACTTTTTGCAGAGATTAGaaaatgtgtgttaatgtgtgcatgtgcacatcTGCATTAGCTATTGGTGAAATTAAATTACCCTTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651307.1 True 514 lncRNA 0.41 3 6103188 6105756

Neighbor

gene id symbol gene type direction distance location
nr1i2 NA coding upstream 240281 5835481 ~ 5862907 (+)
maats1 NA coding upstream 268526 5801891 ~ 5834662 (+)
btla NA coding upstream 464250 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 665956 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 798079 5300599 ~ 5305109 (+)
LOC103026554 LOC108423842 coding downstream 183794 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 190430 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 522850 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 655595 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 732630 6838386 ~ 6884350 (+)
G165343 NA non-coding upstream 99087 5998027 ~ 6004101 (+)
G165323 NA non-coding upstream 172037 5872241 ~ 5931151 (+)
G165326 NA non-coding upstream 224448 5877424 ~ 5878740 (+)
G165316 NA non-coding upstream 235188 5865466 ~ 5868000 (+)
LOC111194876 NA non-coding upstream 340337 5747321 ~ 5762851 (+)
G165402 NA non-coding downstream 22079 6127835 ~ 6128123 (+)
LOC111194880 NA non-coding downstream 31530 6137286 ~ 6142409 (+)
LOC103046189 NA non-coding downstream 40391 6146147 ~ 6158276 (+)
G165416 NA non-coding downstream 84424 6190180 ~ 6190692 (+)
G165426 NA non-coding downstream 85046 6190802 ~ 6192416 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 804460 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3610197 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 4265101 1802787 ~ 1838087 (+)
tspear tspear other upstream 4342628 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 4606808 1404101 ~ 1496380 (+)
LOC107196936 NA other downstream 11608 6117364 ~ 6123051 (+)
G165406 NA other downstream 39181 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 54644 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 234239 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1279377 7385133 ~ 7485349 (+)

Expression


Co-expression Network