LOC111188246


Basic Information

Item Value
gene id LOC111188246
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6241844 ~ 6243216 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651309.1
CAAGGCTCTTACTGGCAGAGTTGATTTTGATAGGCTGGAAATTCCACTGAGCTCTGACAGCAGCGGCTTGTATAAGTGTAACGCTTCAAACCAGTATGGAAATGGAGTAGGTACAATGTATATTCCGATGTCCCCAGACATTTCACCAGACTATACCACCTGTTGGACTTTATTCATAATTTTCATCTTTCtatctactgctgctgctgcttttttaaTATGGAAATGTATCCCATCTGAAACATGCACCAAACGGATTTCAGATCTGAGAGAAAGAATTTTACATACTTCGCATGATCGTGTGCCTCCTGATTCACCTCCACGCAACAGAGAACCAAACCACGTTGACAGCGGTGAAAACAGAAGAGCAGAATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651309.1 True 376 lncRNA 0.42 3 6241844 6243216

Neighbor

gene id symbol gene type direction distance location
nr1i2 NA coding upstream 378937 5835481 ~ 5862907 (+)
maats1 NA coding upstream 407182 5801891 ~ 5834662 (+)
btla NA coding upstream 602906 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 804612 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 936735 5300599 ~ 5305109 (+)
LOC103026554 LOC108423842 coding downstream 46334 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 52970 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 385390 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 518135 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 595170 6838386 ~ 6884350 (+)
G165426 NA non-coding upstream 49428 6190802 ~ 6192416 (+)
G165416 NA non-coding upstream 51152 6190180 ~ 6190692 (+)
LOC103046189 NA non-coding upstream 83568 6146147 ~ 6158276 (+)
LOC111194880 NA non-coding upstream 99435 6137286 ~ 6142409 (+)
G165402 NA non-coding upstream 113721 6127835 ~ 6128123 (+)
G165418 NA non-coding downstream 311 6243527 ~ 6243915 (+)
G165432 NA non-coding downstream 2035 6245251 ~ 6245640 (+)
G165450 NA non-coding downstream 4049 6247265 ~ 6247508 (+)
G165469 NA non-coding downstream 76103 6319319 ~ 6325758 (+)
G165474 NA non-coding downstream 104787 6348003 ~ 6348651 (+)
LOC111194881 NA other upstream 3858 6160400 ~ 6237986 (+)
G165406 NA other upstream 95875 6144937 ~ 6145969 (+)
LOC107196936 NA other upstream 118793 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 943116 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3748853 2490044 ~ 2492991 (+)
wdr4 wdr4 other downstream 96779 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1141917 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1433570 7676786 ~ 7742228 (+)
LOC111194887 NA other downstream 1786179 8029395 ~ 8034584 (+)
LOC103024476 igfbp5,igfbp5b,LOC103024476,LOC107656526,LOC107719877,LOC107601375 other downstream 2737346 8980562 ~ 9067879 (+)

Expression


Co-expression Network