LOC111194872


Basic Information

Item Value
gene id LOC111194872
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 3615389 ~ 3617690 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651317.1
AATGCTAACGTGGGGGCTtggtgtgtggataaggactggggataagagttaacttagctagctagctagtctggaGAGCATATTTAGCGGGCAAAATGCTAACGTGGGGGCTCAgtgtgtggataaggactggggataatagagttagctaaccttgctagttttgttttgtatttgttcaaaATTTAACTTGCCTGTTGACCATATTTTTAGATCCTCTTAGCGATTTAGTTATTTCACACTGTTTTGAGTTGTGCACTTGTTCATTTAAATATCAAAGAGGAGTTCCAGCGCATAACTAACGTTACTTTGCATCTGGAGTCAAAATTCATGTTAAAGCTTGACCAGTATACGTTACACAAAAACTTCTCTATCTTCAGTGCCAAGGCCGGAGCGTCAGGAAGAAGAATGCAAGGCATAATGAGCTGTTTGGTCAAgGGAGCAGTCACCACTGAGCCTGGTGGAGTATGTGGGGGGAACATGGCCTGCTCGCAGAACACTTTGATGAGGGTGAGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651317.1 True 519 lncRNA 0.44 3 3615389 3617690

Neighbor

gene id symbol gene type direction distance location
cps1 cps1 coding upstream 603499 2912007 ~ 3011890 (+)
map2 map2 coding upstream 740323 2660455 ~ 2875066 (+)
kansl1l NA coding upstream 959675 2604058 ~ 2655714 (+)
LOC103024889 nxph2,LOC108413064 coding upstream 1141492 2440656 ~ 2473897 (+)
znf804a znf804a coding upstream 1423475 2093349 ~ 2191914 (+)
LOC103033219 NA coding downstream 422296 4039986 ~ 4043593 (+)
vwc2l vwc2l,LOC107660607 coding downstream 761332 4379022 ~ 4448620 (+)
hibch hibch coding downstream 1053442 4671132 ~ 4734221 (+)
mstn mstn coding downstream 1139054 4756744 ~ 4760314 (+)
ormdl1 ormdl1,LOC107602148 coding downstream 1192858 4810548 ~ 4817692 (+)
G164699 NA non-coding upstream 532439 3082416 ~ 3082950 (+)
G164652 NA non-coding upstream 601773 3012169 ~ 3013616 (+)
G164638 NA non-coding upstream 700284 2818024 ~ 2915105 (+)
G164642 NA non-coding upstream 756021 2858618 ~ 2859368 (+)
G164640 NA non-coding upstream 774711 2836766 ~ 2840678 (+)
G164718 NA non-coding downstream 32685 3650375 ~ 3680035 (+)
G164725 ikzf2 non-coding downstream 182646 3800336 ~ 3802599 (+)
G164845 NA non-coding downstream 349806 3967496 ~ 4010020 (+)
G164888 NA non-coding downstream 672626 4290316 ~ 4290564 (+)
G164893 NA non-coding downstream 730559 4348249 ~ 4348655 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 1122398 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 1777302 1802787 ~ 1838087 (+)
tspear tspear other upstream 1854829 1744406 ~ 1760560 (+)
LOC103047444 myo10l3,LOC108413799,LOC102206624,LOC102799206,LOC101480403,LOC102301787,LOC107087138,LOC108240768,LOC107677785,LOC107752883 other upstream 2119009 1404101 ~ 1496380 (+)
G164126 NA other upstream 3043196 538279 ~ 572193 (+)
LOC103021746 LOC108436791,LOC107721608 other downstream 1650349 5268039 ~ 5298728 (+)
LOC107196936 NA other downstream 2499674 6117364 ~ 6123051 (+)
G165406 NA other downstream 2527247 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 2542710 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 2722305 6339995 ~ 6345403 (+)

Expression


Co-expression Network