LOC111194880


Basic Information

Item Value
gene id LOC111194880
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 6137286 ~ 6142409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651325.1
TGGAAGTGAGGATAGGGGAGAAGATTTTGTTTGGCGTAAAGAGAAGAATCTTCTTTTTATCTACAGCCCCTATATTAACCAAACTGTAACAAACTACACATCAAGCAGGATGAGTGTAGATCCCAGTGATCCATGGAAACTACAGATATCTAACGTTCAGCCTTCAGACGCAGGAACCTATTACTGCTTCCCATCAAAAATTCAATGGATTCTGACCATAAAAGTCAGTGAACCAAGTAAACCAAAGCAGTCTACAGATCTGCACATGTACATCATACCCTCAGTAACAGGAGCTGTCGCAATATTCTTTATTATCTTCGGCACTGTGTGGATTCAAAGGAGATGGAGAAGGAATTAGGCTGCTGGAAATAGAGGAACAAGGAATACGCTTGTGAGTCatctttcttttcttgtcttacgaaacttttgattggtattgAAGAatacaaatgatttaaaatataaacaatggCAACGCTTGTGGTCAGTGGTGAATTGCGTCTGTTCAGTTTGCAGTCAggttgagtacaaaaaagtgtgCAACTGGAACACGTTCAACTCTGTTACTGCTTATCCTGTGGCTGAGCAATCCTATATAGAACATTAACAACAACACTATGGTTAACTGATACTATCTGTGTTCATGAGAAAAAAGCACTGAACAATAACAATTTGTGAGAGGTTACCACAAAGGAAACCAATCAGCCTTCAACAAATAACTGCCCATCTGAAGAGACTAAGCCACAGGTTAACAAcagcccagataagagccacttaaatgtattttgatttgtttaacactacatgattctttatgtgttccttcataatctgaattTACAAAGCTTTTCTTTGACTTTCACCTTGTTGTAACAAAGGCTGCACTACCCGTTGTGAAAGCTGCAGCCTTCCGTGTGAAAGCTAGCCAATGGGGGCAGAATTTAGAAGGTACAGATACGCACCACAAGTGAGCATAAATACgatgttaaaaaatatgatgaaGCTCTTGATGCAGGGAGTATAAACCAGCCTTTACTCTCAACCTGCAGCCTGTGTGTAACATATCTTCATTAACACCATTCTGAACAG
>XR_002651326.1
TGGAAGTGAGGATAGGGGAGAAGATTTTGTTTGGCGTAAAGAGAAGAATCTTCTTTTTATCTACAGCCCCTATATTAACCAAACTGTAACAAACTACACATCAAGCAGGATGAGTGTAGATCCCAGTGATCCATGGAAACTACAGATATCTAACGTTCAGCCTTCAGACGCAGGAACCTATTACTGCTTCCCATCAAAAATTCAATGGATTCTGACCATAAAAGTCAGTGAACCAAGTAAACCAAAGCAGTCTACAGATCTGCACATGTACATCATACCCTCAGTAACAGGAGCTGTCGCAATATTCTTTATTATCTTCGGCACTGTGTGGATTCAAAGGAGATGGAGAAGGAATTAGGCTGCTGGAAATAGAGGAACAAGGAATACGCTTACAGGAGTGCACCAGAATGAGCTTCAATGAAGCTTCCACAAGAAGATACAGACCTGCTGCCTGAAAGCTGCAGACAAGCCTACCAACATCTAACTAACCAACATCAGCTTTTCCTGCCGCCATCTCCAGACTCGAACACAGCGTGCTTCACCCTTAGCATGTGTAATCTCAGAAATGCAGTGTGGTGATCATTATCAGATCTCAGCACTTTTAGCCGTCTAGACTGCATCTGCCTATATCAGACGCTAGCTAATGCTTCTTTTATTAATCTGAAATGGACAAATAATAAGTTGACAAATGTTTCAGATGTCATatactaatatttaatatatatgaagTTAGGCTAATCACAATAATGGACTGTAAAAAAGTTCTGTTTTGTACAGTTGGACACCCTTTGTATGCTTTCAATTTTTTAGCCTTTTGTTCTCTAATTTAGCTTAGCCAATTATTTCACCCACTCAGTTGGACTCCACCTATCTTTTGCGATGTTCCCGACACTAGTCCCTACAAGACCATGTGCATGCCTCGTCCAATATATAATCTAAAGCCAACAAGtttgctctctcagactctggctgctgatgtcaAAGCAGCATTACTGAGGATTCAAACTCACAATCTTCAGGCCACAGTGTTAATGCTTTATCCTGTTTCCCCGCTTATGGCTTTTGTTTGCTATTTAACGGTTATGGGTTAATGTTACATTGCTGATGATAAAATGTAGCTGCAAGCTtcaa
>XR_002651327.1
TGGAAGTGAGGATAGGGGAGAAGATTTTGTTTGGCGTAAAGAGAAGAATCTTCTTTTTATCTACAGCCCCTATATTAACCAAACTGTAACAAACTACACATCAAGCAGGATGAGTGTAGATCCCAGTGATCCATGGAAACTACAGATATCTAACGTTCAGCCTTCAGACGCAGGAACCTATTACTGCTTCCCATCAAAAATTCAATGGATTCTGACCATAAAAGTCAGTGAACCAAGTAAACCAAAGCAGTCTACAGATCTGCACATGTACATCATACCCTCAGTAACAGGAGCTGTCGCAATATTCTTTATTATCTTCGGCACTGTGTGGATTCAAAGGAGATGGAGAAGGAATTAGGCTGCTGGAAATAGAGGAACAAGGAATACGCTTGCAACTCTGCTAAATGCCTTTTACTTTTACAGAGACACGCTGACTTC

Function

GO:

id name namespace
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651325.1 False 1089 lncRNA 0.39 3 6137286 6139397
XR_002651326.1 True 1131 lncRNA 0.40 4 6137286 6142409
XR_002651327.1 False 438 lncRNA 0.41 4 6137286 6141485

Neighbor

gene id symbol gene type direction distance location
nr1i2 NA coding upstream 274379 5835481 ~ 5862907 (+)
maats1 NA coding upstream 302624 5801891 ~ 5834662 (+)
btla NA coding upstream 498348 5628989 ~ 5638938 (+)
LOC103047200 sik1,LOC108436788,LOC105908677,LOC103352856,LOC106940689 coding upstream 700054 5423935 ~ 5437232 (+)
LOC103021436 ube2a,ube2al,LOC103021436,LOC103029486,LOC108259060,LOC107552373,LOC105934920,LOC107588833 coding upstream 832177 5300599 ~ 5305109 (+)
LOC103026554 LOC108423842 coding downstream 147141 6289550 ~ 6293768 (+)
tmprss3 tmprss3 coding downstream 153777 6296186 ~ 6307328 (+)
ccdc148 NA coding downstream 486197 6628606 ~ 6733187 (+)
LOC103030586 acvr1 coding downstream 618942 6761351 ~ 6832556 (+)
acvr1c acvr1c,LOC107734493,LOC107657408,LOC107548804,LOC107745259 coding downstream 695977 6838386 ~ 6884350 (+)
G165402 NA non-coding upstream 9163 6127835 ~ 6128123 (+)
LOC111194857 NA non-coding upstream 31530 6103188 ~ 6105756 (+)
G165343 NA non-coding upstream 133185 5998027 ~ 6004101 (+)
G165323 NA non-coding upstream 206135 5872241 ~ 5931151 (+)
G165326 NA non-coding upstream 258546 5877424 ~ 5878740 (+)
LOC103046189 NA non-coding downstream 3738 6146147 ~ 6158276 (+)
G165416 NA non-coding downstream 47771 6190180 ~ 6190692 (+)
G165426 NA non-coding downstream 48393 6190802 ~ 6192416 (+)
LOC111188246 NA non-coding downstream 99435 6241844 ~ 6243216 (+)
G165418 NA non-coding downstream 101118 6243527 ~ 6243915 (+)
LOC107196936 NA other upstream 14235 6117364 ~ 6123051 (+)
LOC103021746 LOC108436791,LOC107721608 other upstream 838558 5268039 ~ 5298728 (+)
G164539 spopl,LOC107751611,LOC108413068,LOC102233870 other upstream 3644295 2490044 ~ 2492991 (+)
LOC103028062 cunh3orf70,zgc:162707,LOC107668408,LOC107749877,LOC107752906,LOC107596553,LOC107592986 other upstream 4299199 1802787 ~ 1838087 (+)
tspear tspear other upstream 4376726 1744406 ~ 1760560 (+)
G165406 NA other downstream 2528 6144937 ~ 6145969 (+)
LOC111194881 NA other downstream 17991 6160400 ~ 6237986 (+)
wdr4 wdr4 other downstream 197586 6339995 ~ 6345403 (+)
LOC103040759 speg,LOC108423902,LOC108266540 other downstream 1242724 7385133 ~ 7485349 (+)
LOC103036674 col18a1,LOC108423906 other downstream 1534377 7676786 ~ 7742228 (+)

Expression


Co-expression Network