LOC103024454 (hsp90aa1.1,LOC103024454,LOC108411468,LOC108257813,LOC107704377,LOC107557012,LOC107564585)


Basic Information

Item Value
gene id LOC103024454
gene name hsp90aa1.1,LOC103024454,LOC108411468,LOC108257813,LOC107704377,LOC107557012,LOC107564585
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43336847 ~ 43341516 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>NM_001291257.1
ACTGCAAGGAGCATAGCTCTATACACAAGACTACGAGAAGACTCGCACCAAGTGGAGTAAACCTCCATACACCAGAAGACTTGTCCATCATTTCCAATAGAAGACTTTAAGACAAAACCAAAGATGCCAGAGAAAGCTGCCCAGCCTGTGATGGAGGAGGATGTGGAGACTTTTGCCTTTCAGGCTGAAATTGCTCAGTTGATGTCCCTGATCATCAACACCTTTTATTCCAACAAAGAAATCTTCCTCAGAGAGCTCATCTCAAACTCCTCAGATgCCCTGGACAAGATCAGATATGAGAGCTTGACAGACCCAAGTAAACTTGAGTCCTGCAAAGACCTGAAGATTGAGCTCATTCCTGACCTGAAGAACCGCACACTGACCATCATTGACACTGGAATTGGCATGACCAAGGCCGATCTCATCAACAACCTGGGCACCATTGCCAAGTCTGGAACCAAGGCCTTCATGGAGGCTCTGCAGGCTGGAGCTGACATCTCCATGATTGGCCAATTCGGTGTGGGTTTCTACTCAGCCTACCTGGTAGCAGAGAGAGTCACAGtcatcaccaaacacaatgaTGATGAGCAGTATGTCTGGGAGTCTGCAGCTGGGGGATCCTTTACAGTTAAGCCAGACAATGGTGAGTCTATCGGTCGTGGCACAAAGGTGATTCTTCATCTAAAGGAAGATCAGTCTGAATATACAGAGGAGAAGCGCATCAAGGAAGTTGTGAAGAAGCACTCACAGTTTATCGGCTATCCCATCACTCTCTTTgtggagaaacagagagaaaaagaggttgATCtggaagagggagagaaggaggaggaggtacCAGCTGCTGAAGACAAAGACAAGCCCAAGATTGAGGATGTGGGATCCGATGAGGATGAGGACAGCAAGGGTAACAAaaacaagaggaagaagaaggtcAAGGAAAAGTACATTGATGCCCAAGAGCTGAACAAGACCAAGCCTATCTGGACCCGTAACCCTGATGACATCACCAATGAAGAATACGGCGAGTTCTACAAAAGCCTTACAAATGATTGGGAGGATCACCTTGCAGTCAAGCACTTCTCAGTGGAGGGCCAGCTGGAGTTCCGTGCTTTGCTGTTTGTGCCAAGAAGGGCAGCTTTTGATCTTTTTGAgaacaagaagaagagaaaCAACATTAAACTCTATGTGCGCAGAGTCTTCATTATGGACAACTGTGAGGAGCTAATGCCTGAATATCTCAATTTTATGAAGGGTGTGGTAGACTCTGAGGATCTGCCCCTAAACATCTCCAGAGAGATGCTGCAACAGAGCAAGATCCTCAAAGTCATCCGAAAGAACCTGGTCAAGAAGTGCCTTGAGCTCTTCACTGAAATCTCAGAGGACAAGGACAACTACAAGAAGTTATATGAGCAGTTTTCCAAGAACATCAAGCTTGGTATCCATGAAGATTCTCAGAACCGCAAGAAGCTCTCAGAGCTGTTGCGCTACTACACCTCCAACTCTGGTGATGAGATGGTGTCTCTCAAGGACTACGTGTCCCGCATGAAAGACAGCCAGAAGCACATCTACTATATTACTGGTGAGACAAAGGATCAGGTGGCCAACTCTGCCTTTGTGGAACGTCTACGCAAAGCCGGCCTAGAGGTGATCTACATGATCGAGCCCATTGATGAGTACTGTGTTCAGCAGCTTAAAGAATATGATGGCAAAAACCTGTTGTCAGTTACCAAAGAAGGTCTGGAGCTTcctgaagatgaagaagaaaagaaaaagcaagatGAACTGAAAACCAAGTTTGAAAACCTTTGCAAGATTATGAAAGACATTCTGGATAAGAAAATTGAAAagGTTACTGTGTCCAACCGCCTGGTCGCCTCTCCTTGCTGCATCGTTACCAGCACATATGGCTGGACAGCCAACATGGAAAGGATAATGAAGTCGCAGGCTCTGAGGGACAACTCCACCATGGGCTACATGACTGCCAAGAAACATCTAGAGATTAACCCCCTGCACCCCATCGTTGAGACCCTGAGAGAGAAAGCTGAGGCTGACAAAAATGACAAAGCGGTGAAAGACCTTGTTATTCTGCTCTTCGAGACTGCCCTACTTTCTTCTGGATTCACCCTGGAGGACCCACAGACACATGCTAACCGCATCTACAGAATGATTAAACTTGGTCTTGgcattgatgatgatgattcgGCGGTTGAGGACATTCTTCAGCCCACTGAGGAGGACATGCCTGTCCTGGAGGGAGACGATGACACATCAAGAATGGAAGAAGTTGACTAAGATTTTGAAGTAGAAATAGCACAGAACAAATCTAAATGTaaatctgtttaatttaaacactgtttaattttGAAACACATTGCCTAGCTAGATAGTCTATTTATTCTTTAACCTTTCGATTAGTTTTGTTTTGGAAGATATGTTGTGCCTTGTCGGAGTTTGTGATTagaaaatatatcatttttaattttgtttttttttatggtgtaACTTTTTTAAGGAAGCAAAGCAACtttctaataaaatattgtgcagAAA

Function

symbol description
hsp90aa1.1 Predicted to enable several functions, including ATP binding activity; disordered domain specific binding activity; and unfolded protein binding activity. Acts upstream of or within leukocyte migration; myofibril assembly; and response to metal ion. Located in Z disc. Is expressed in several structures, including immature eye; musculature system; paraxial mesoderm; pericardial region; and skeletal muscle myoblast. Orthologous to human HSP90AA1 (heat shock protein 90 alpha family class A member 1).

NR:

description
heat shock protein HSP 90-alpha 1-like

GO:

id name namespace
GO:0045429 positive regulation of nitric oxide biosynthetic process biological_process
GO:0048769 sarcomerogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0042470 melanosome cellular_component
GO:0030018 Z disc cellular_component
GO:0005524 ATP binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001291257.1 True 2553 mRNA 0.44 11 43336847 43341516

Neighbor

gene id symbol gene type direction distance location
LOC103024139 LOC107100300,LOC107378075,LOC108257811 coding downstream 178 43328607 ~ 43336669 (-)
LOC103025090 ppp2r5cb,ppp2r5c,LOC103025090,LOC108411434,LOC107704375,LOC108257814,LOC104924693,LOC103369946,LOC100694131,LOC101473650 coding downstream 10815 43295459 ~ 43326032 (-)
slc25a29 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594 coding downstream 147488 43179427 ~ 43189359 (-)
LOC103042238 hpcal1,LOC108411356,LOC107549126,LOC101077504,LOC108258003 coding downstream 273679 43051888 ~ 43063168 (-)
c3h2orf70 NA coding downstream 438364 42895773 ~ 42898483 (-)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107704380 coding upstream 9377 43350893 ~ 43356000 (-)
LOC103027377 LOC108416125,LOC101075333,LOC106560396 coding upstream 258141 43599657 ~ 43664802 (-)
LOC103034775 NA coding upstream 325331 43666847 ~ 43672990 (-)
LOC103035096 NA coding upstream 347382 43688898 ~ 43703969 (-)
LOC103035417 NA coding upstream 368212 43709728 ~ 43716198 (-)
G25802 myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 non-coding downstream 157628 43172973 ~ 43179219 (-)
G25797 LOC108411385 non-coding downstream 165633 43160421 ~ 43171214 (-)
G25776 NA non-coding downstream 201561 43119814 ~ 43135286 (-)
G25774 NA non-coding downstream 205095 43124819 ~ 43131752 (-)
G25777 NA non-coding downstream 209514 43061698 ~ 43127333 (-)
G25874 NA non-coding upstream 18972 43360488 ~ 43363090 (-)
G25902 NA non-coding upstream 120153 43461669 ~ 43462154 (-)
G25903 NA non-coding upstream 142573 43484089 ~ 43484368 (-)
G25986 palld,LOC107755258,LOC106560254 non-coding upstream 524860 43866376 ~ 43885038 (-)
G26009 NA non-coding upstream 580360 43921876 ~ 43924352 (-)
G25785 NA other downstream 225446 43098822 ~ 43111401 (-)
G25678 NA other downstream 618458 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 1456423 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 1471003 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 1894353 41436041 ~ 41442494 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 153903 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 333509 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 549113 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 1427748 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 1514583 44856099 ~ 44870690 (-)

Expression


Co-expression Network