LOC103028976 (LOC103028976,LOC108410497,LOC107575557)


Basic Information

Item Value
gene id LOC103028976
gene name LOC103028976,LOC108410497,LOC107575557
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45560546 ~ 45570484 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>NM_001320207.1
GTAactttcagcagcagcagcagagaaagcagcagcagctcacctgGAGGAGGAAAACACCGCGCTGCAGAGATGACCGAGACCCGGACACACGCTCACACAGCCCGACCGAGCTCACAGGGACACCGGGGTCTGGCTTTATGAGTCTAATCTTCTACAAACTGcggtttaaaacaacaaaataacagagagagagagaggcgcgtGTGGTCTGGGTATATCACTGCTCAGCCTgtctgaaggaggaggaggagaagggcATGAAGGAGAAGCCGAGGAGAGCCGGGCCGGGGCTGCTGCAGCTGTGTGAAGTCCGGTGACTTTATCTGTGTGGATTGTTTTAACACGAATTGATGAAGAATTTAAAGGAGACGACAGCCGGAGCAACGACCGCTTCCCCGTCCGGATCTGCGTGGTGAGCATGGTGGCCGCGGTGCGCTCCGTCAcggcgctgctgctgctcgcTCAGGTGCTGCTGGGAGGCGTTGCCGCCGCGCTCGTGCCCGACGTGGAGCGGCGCAGGCCCGGAGAGCAGAGCTCGAGCTTCCTGCGCGAGTTCGAGCTGCGCCTGCTCAACATGTTCGGCCTGAAGCGCAGACCCACGCCCAGCGGCGCCGCCGTCGTGCCCGACTACATGCTCGAGCTCTACCACCTGCACGCGGGGGGTGACGGAGGAGCGCACGAGCAGCACCTTCAGCAGGGCGCGCGGAGGAGGCGCGCGGACAGGGCGGCCAGCCGGGCCAACACCATCAGGAGCTTCCATCACGAAGAAGCTTTTGAGGCCCTCTCCAGCCTGAAAGGAAAGACAACACAGCAGTTCTACTTCAACCTCACCTCAGTGCCAGCAGAGGAGCTAATCACAGCCGCGGAGCTGCGCGTCTTCAGAGACCAAGTTCTAGGTGACTTTACAAAGAGCAACAGCAGTGTTGCAGGTGGTTTTCACCGCATAAACATTTTCGAGGTGTTCAGGCCAGCTCATTCCCTATCAGAGGAGCCTCTCACCAGGCTGGTGGATACTCGTCTGGTGCAGGACTCTCATTCGCGGTGGGAGAGCTTCGATGTGGGCTCAGCAGTGGCGCGCTGGACCGCACACTCGCACCACAATCATGGCCTCCTGGTGGAGGTGCTTCATCCTGAGGAGAGCAGTGGAGAGGAGCAGGCCGAGAGGAACAGGAGGAGGCACGTAAGGGTGAGCCGTTCCCTGCACGGGGACGAGGACTCTTGGTCGCAGGCCCGGCCGCTGCTGGTTACTTACAGCCACGATGGTAAGGGTACGCCCCTCCTGCAGCCACACAGAGAGAAACGGCAGGCGCGGCGTGGGCCCAAGCAGCGGCGGAAACCACACCAGCGCACCAACTGCCGCCGGCACCCGCTTTACGTGGACTTCAGCGACGTGGGATGGAATGAGTGGATCGTGGCTCCGCCTGGCTACCATGCCTTCTACTGCAACGGCGAGTGCCCCTTTCCGCTTTCTGACCACCTCAACTCCACAAACCACGCCATAGTCCAGACTTTGGTGAACTCGGTAAACTCCAACATTCCTCGGGCTTGCTGCGTGCCCACAGAACTCAGCCCCATCTCTCTGCTCTACCTGGATGAGTATGAAAAAGTTGTACTGAAAAACTATCAGGACATGGTTGTAGAGGGCTGCGGTTGCCGGTGAGAGGCAAACTCCCAATGAAGacttttatttatatgaaaGAACATTCAAAGAGCTATTTTGGAGGAaagaaaagtatatatatatatataattatatttatgttgactgaaaaaatgggaaaataaatattttaatgagagtgttttttgctttttcagtGGTTTTGAAGATGTTTGTCCAATGTACATTCAGTACATTTCAATAGCACATGAAGTATGATGCTCAgatttttaatatgtatttatttcatcATAACCACTTTATTTGTAAATGAATTATGTGTATTTATcatgaaaaaatatatcttttccCATC

Function

NR:

description
bone morphogenetic protein 2-like precursor

GO:

id name namespace
GO:0001710 mesodermal cell fate commitment biological_process
GO:0060876 semicircular canal formation biological_process
GO:0055015 ventricular cardiac muscle cell development biological_process
GO:0045168 cell-cell signaling involved in cell fate commitment biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0040007 growth biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001889 liver development biological_process
GO:0060030 dorsal convergence biological_process
GO:0030903 notochord development biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005576 extracellular region cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04662 BMP4; bone morphogenetic protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001320207.1 True 1978 mRNA 0.54 3 45560546 45570484

Neighbor

gene id symbol gene type direction distance location
LOC103022161 NA coding upstream 58900 45495681 ~ 45501646 (+)
LOC103023922 NA coding upstream 119290 45433919 ~ 45441256 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding upstream 600310 44872464 ~ 44960236 (+)
wdcp wdcp,LOC107600078 coding upstream 751697 44803559 ~ 44808849 (+)
LOC111197225 LOC108410507 coding upstream 833341 44710373 ~ 44727205 (+)
LOC103021983 plcb1,LOC108258091 coding downstream 45078 45615562 ~ 45785454 (+)
plcb4 plcb4,LOC108258041 coding downstream 232270 45802754 ~ 45926101 (+)
lamp5 lamp5,zgc:165600 coding downstream 363990 45934474 ~ 45945832 (+)
LOC103025099 LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090 coding downstream 499089 46069573 ~ 46076984 (+)
LOC103030371 NA coding downstream 562089 46132573 ~ 46134116 (+)
G26390 NA non-coding upstream 21607 45450009 ~ 45538939 (+)
G26402 fermt1 non-coding upstream 31961 45524488 ~ 45528585 (+)
G26322 NA non-coding upstream 447578 45111185 ~ 45112968 (+)
G26286 NA non-coding upstream 694862 44865143 ~ 44865684 (+)
G26280 NA non-coding upstream 706036 44853881 ~ 44854510 (+)
G26476 NA non-coding downstream 496404 46066888 ~ 46067187 (+)
G26477 NA non-coding downstream 509821 46080305 ~ 46083403 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding downstream 785401 46355885 ~ 46357866 (+)
G26529 NA non-coding downstream 793400 46363884 ~ 46409990 (+)
G26667 NA non-coding downstream 839947 46410431 ~ 46410875 (+)
LOC103033920 LOC108416105 other upstream 2066230 43490323 ~ 43494316 (+)
G25880 NA other upstream 2135640 43424392 ~ 43424906 (+)
G25879 NA other upstream 2138500 43421771 ~ 43422046 (+)
rps29 NA other upstream 2197102 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 2298447 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 957884 46528368 ~ 46549553 (+)
G26915 NA other downstream 2707783 48278267 ~ 48315894 (+)
G26995 NA other downstream 2985313 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3008319 48578803 ~ 48618075 (+)
G27075 NA other downstream 3170730 48741214 ~ 48742439 (+)

Expression


Co-expression Network