G15659


Basic Information

Item Value
gene id G15659
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 459789 ~ 486454 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU21171
AAGGTCACacattctaatattttgttggaccgCCTTGTCAGGGCGGGGGTGCAGggtagacgaggaggcggatgCAATATGCAAACAAAAGGGATTTAttcaagaaaacaaatacaaaacacaccgggaataaactaaaaacaggactgaggaactGGGGAACacatggaacactgacagacgataaacgtacaaggatcgacaccgggaaaatggaacacggaccttaaatagaggtgcacacacacagggaacaggaaacacctgggacgaaggggcggagctacaaaggAACACAGg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21171 True 300 lncRNA 0.38 3 459789 486454

Neighbor

gene id symbol gene type direction distance location
LOC111194470 mogat3 coding upstream 20225 430383 ~ 439564 (+)
LOC103030708 NA coding upstream 148925 303636 ~ 310864 (+)
LOC103033126 NA coding upstream 365897 89699 ~ 93892 (+)
LOC103033448 NA coding upstream 403689 41692 ~ 56100 (+)
LOC103028849 NA coding downstream 23118 509572 ~ 524138 (+)
LOC103023152 NA coding downstream 64589 551043 ~ 558402 (+)
LOC111191737 NA coding downstream 113974 600428 ~ 609429 (+)
cryab cryab,LOC108259721 coding downstream 951352 1437806 ~ 1442109 (+)
LOC103029064 LOC103029064,LOC108428730 coding downstream 971016 1457470 ~ 1469889 (+)
G15636 znhit1,LOC107752359,LOC107661214,LOC106567874,LOC108259938 non-coding upstream 14129 443166 ~ 445660 (+)
G15612 NA non-coding upstream 67616 318133 ~ 392173 (+)
G15566 NA non-coding upstream 182608 246855 ~ 277181 (+)
G15565 pld2,LOC108428962,LOC107661209,LOC107599219,LOC107663402,LOC107746406 non-coding upstream 231599 225524 ~ 228190 (+)
G15560 NA non-coding upstream 252686 203692 ~ 207103 (+)
G15660 NA non-coding downstream 6816 493270 ~ 493638 (+)
LOC111191745 NA non-coding downstream 97256 583710 ~ 588307 (+)
LOC111194487 NA non-coding downstream 105774 592228 ~ 593633 (+)
LOC111194483 NA non-coding downstream 107201 593655 ~ 597730 (+)
LOC111194479 NA non-coding downstream 126583 613037 ~ 615239 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 338608 70784 ~ 121181 (+)
LOC103025578 NA other downstream 836062 1322516 ~ 1340800 (+)
fdxacb1 fdxacb1 other downstream 1030043 1516497 ~ 1529417 (+)
G15839 NA other downstream 1194705 1681159 ~ 1682022 (+)
nrgn NA other downstream 1664176 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 4029543 4515997 ~ 4517309 (+)

Expression


Co-expression Network