G15660


Basic Information

Item Value
gene id G15660
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 493270 ~ 493638 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU21173
TCCACATACATCTACCAAAGAACCAATAAACCAATGAACCAGCCCTGTCTATCCATCCCCATACATCTACCAAAGAACCAATAAACCAATGAACTAGCCCTGTCTATCCATCCCCATACATCTACCAAAGAACCAATAAACCAGTGAACCAGCCCTGTCTCTCCATCCTCATACCATTGAACCAGTTATGCAGTCCTATCTAGTCAACTTCACATCACTACCACTAATTCAGGGAATGGGAATGGGGAGACCAGGCTG

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU21173 True 258 lncRNA 0.34 2 493270 493638

Neighbor

gene id symbol gene type direction distance location
LOC107197531 NA coding upstream 25186 448393 ~ 468084 (+)
LOC111194470 mogat3 coding upstream 53706 430383 ~ 439564 (+)
LOC103030708 NA coding upstream 182406 303636 ~ 310864 (+)
LOC103033126 NA coding upstream 399378 89699 ~ 93892 (+)
LOC103033448 NA coding upstream 437170 41692 ~ 56100 (+)
LOC103028849 NA coding downstream 15934 509572 ~ 524138 (+)
LOC103023152 NA coding downstream 57405 551043 ~ 558402 (+)
LOC111191737 NA coding downstream 106790 600428 ~ 609429 (+)
cryab cryab,LOC108259721 coding downstream 944168 1437806 ~ 1442109 (+)
LOC103029064 LOC103029064,LOC108428730 coding downstream 963832 1457470 ~ 1469889 (+)
G15659 NA non-coding upstream 6816 459789 ~ 486454 (+)
G15636 znhit1,LOC107752359,LOC107661214,LOC106567874,LOC108259938 non-coding upstream 47610 443166 ~ 445660 (+)
G15612 NA non-coding upstream 101097 318133 ~ 392173 (+)
G15566 NA non-coding upstream 216089 246855 ~ 277181 (+)
G15565 pld2,LOC108428962,LOC107661209,LOC107599219,LOC107663402,LOC107746406 non-coding upstream 265080 225524 ~ 228190 (+)
LOC111191745 NA non-coding downstream 90072 583710 ~ 588307 (+)
LOC111194487 NA non-coding downstream 98590 592228 ~ 593633 (+)
LOC111194483 NA non-coding downstream 100017 593655 ~ 597730 (+)
LOC111194479 NA non-coding downstream 119399 613037 ~ 615239 (+)
G15724 NA non-coding downstream 192435 686073 ~ 705802 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 372089 70784 ~ 121181 (+)
LOC103025578 NA other downstream 828878 1322516 ~ 1340800 (+)
fdxacb1 fdxacb1 other downstream 1022859 1516497 ~ 1529417 (+)
G15839 NA other downstream 1187521 1681159 ~ 1682022 (+)
nrgn NA other downstream 1656992 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 4022359 4515997 ~ 4517309 (+)

Expression


Co-expression Network