G56242


Basic Information

Item Value
gene id G56242
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9486599 ~ 9486808 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU64045
GTTAAAAAAGTTTACTATACAGCCTGTAGGTGTCAGTCTTGAGCAGCCCATAATGACATGAGATGAATCAAAAGACGTAAGCTCATAAAATAACCTTCTACTGATAACCTTCTACTGATAACCTTCTATCAGTCTAAGAGCTCCATTTAATACTATAGACCACAACATTATTTTGAATATACAGTGCTTAAAAAATTTATTAGACCACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64045 True 210 lncRNA 0.33 1 9486599 9486808

Neighbor

gene id symbol gene type direction distance location
CI01000009_09435601_09439347 NA coding upstream 47238 9435601 ~ 9439361 (+)
CI01000009_09390390_09394996 UCHL3 coding upstream 91277 9390390 ~ 9395322 (+)
CI01000009_09350871_09357630 CRYGMXL1 coding upstream 128888 9349311 ~ 9357711 (+)
CI01000009_09348023_09349053 CRYGM2D18, CRYGM2D14, CRYGM2D15, CRYGM2D16, CRYGM2D17, CRYGM2D10, CRYGM2D11, CRYGM2D12, CRYGM2A, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2F, CRYGM2D21, CRYGM2D20, CRYGM2D9, CRYGM2D6, CRYGM2D7, CRYGM2D4, CRYGM2D5, CRYGM2D2, CRYGM2D3, CRYGM2D1 coding upstream 137531 9347898 ~ 9349068 (+)
CI01000009_09342330_09343084 CRYGM2A, CRYGM2C, CRYGM2B, CRYGM2E, CRYGM2D20, CRYGM2F, CRYGM2D2, CRYGM2D7, CRYGM2D18, CRYGM2D21, CRYGM2D9, CRYGM2D14, CRYGM2D15, CRYGM2D17, CRYGM2D10, CRYGM2D1, CRYGM2D12, CRYGM2D5 coding upstream 143472 9342253 ~ 9343127 (+)
CI01000009_09490460_09493598 IRG1 coding downstream 3652 9490460 ~ 9493633 (+)
CI01000009_09499329_09500173 NA coding downstream 12521 9499329 ~ 9500199 (+)
CI01000009_09542674_09559750 NA coding downstream 53404 9540212 ~ 9560037 (+)
CI01000009_09685457_09693885 AFF3 coding downstream 198649 9685457 ~ 9693888 (+)
CI01000009_09700487_09709797 MPHOSPH8 coding downstream 213679 9700487 ~ 9709983 (+)
G56204 NA non-coding upstream 2629 9482094 ~ 9483970 (+)
G56225 NA non-coding upstream 106805 9379585 ~ 9379794 (+)
G56220 NA non-coding upstream 123055 9363315 ~ 9363544 (+)
G56183 NA non-coding upstream 226542 9259321 ~ 9260057 (+)
G56175 NA non-coding upstream 238228 9246729 ~ 9248371 (+)
G56243 NA non-coding downstream 1377 9488185 ~ 9488544 (+)
G56306 NA non-coding downstream 161120 9647928 ~ 9654726 (+)
G56320 NA non-coding downstream 181934 9668742 ~ 9669179 (+)
CI01000009_09866000_09866290 NA non-coding downstream 378538 9865723 ~ 9867040 (+)
G56383 NA non-coding downstream 386424 9873232 ~ 9876664 (+)
G56100 NA other upstream 356313 9129300 ~ 9130286 (+)
G53651 NA other upstream 3238207 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 3553798 5931718 ~ 5943899 (+)
G53388 NA other upstream 3947545 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 6277615 3202207 ~ 3208984 (+)
CI01000009_09853929_09854476 SAP18 other downstream 366551 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 2273978 11761606 ~ 11766944 (+)
G57811 NA other downstream 2447134 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 2945750 12432538 ~ 12436017 (+)
G57682 NA other downstream 3338661 12825469 ~ 12892339 (+)

Expression


Co-expression Network