G15818


Basic Information

Item Value
gene id G15818
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 1586778 ~ 1636251 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU21406
tttctCAGGTTTAATACCAACAAAGTATAGCCAACAAAAGCTTGACTACAAACTCTAGAACAAGTCATGAtgagttatttttttcctgaaaggCATGAAATGGCACAGACAAAGTAAACACATTCACTACCGACGCCAGTTCTAGGCGTCAGGACTATTACTGTAGCCTCAGATATTGCTATTATACTTCTGGACGGCGTATAATAATATTGTCGGACCGTATCCGTATCGCGTAGCTTGATCTGATCCCTCTAAAGCCACATAGTGGAGTTGGAAGGAGGGCATCGTCGGAGGGgctttggttccataaagaggTCACTTAACACTATTCCCCAACAGGAAATTTCGCAGGACTCCGTTACGACATACATTcttaaaaagaacagaaaagaaaggAGGAGAAAGGCACgtcactaaaacactaaaaatgtttCAGGAGAAACGGTTACAAGAGTGCATCTAGCAGCCATTGTGCAAGAGCCTTGTACAGCTCCTTGCTGCTCACGAGGAGCGATTACAAAACCCGAGTGGTTGCTTTGTCGATTCGTAAATGAGCCGAGCGCAAAAAGTAAAATGGCGGAACTGCAACCTAAGAGTTGCGCTAAAGAGGGAAACTGAATGGGAGGATCTACGTATATATTTCTTACTGTTTACCATTTCCATCTGTCTAAGactctgtttacacctggtcattCCATGCAACTTGATCAAGATTTGGTTACACAGCTCAGACTGCTGGCGCAAATCAAATTTCTAGCACATGGAGATTTTAATCAGAATAATTTTCGATCATCTGAACAACCAGAAACCACATGATTTGGTTGGATTTGGTTTGAAATGCACTGGGATTACACTCATAAGCTCTATCCGGACGggtttagtttctcagggggacgtctgtgaaaaatatttcacacttctactcagtgataaatctcttgcatccggactgcaattgaaaaaacaggaggaccagtgattttttaggcttttttgatcacatgacattgcgttcagtagcttctccatttccactcgctgttgtgtgtACGTGGAACTCTATGGAAACGCGCGCCCAATGTGTAAATACAGTGtctggcagtggacaaatagctattttattaaacgtgaggtgaagAAACTAAAGAGGTGTGCATCCAGACGAGagtaaaattaccagaggaccacagagttcagcgaaaaacagtagataattcagcctgtaattttctcagaggacaggaataaaatcacagagaaaatGTCCCCAGGACCCCTTGAGatactaatcctgtccggatagggctatatTTGTACTGATGAGTCTCAGTCTGGATACTCAAATccgactcaaatcagatttcacTGCATCTTCAGTGCATCACTCGCACCACAACCAACAGCAGCCTCGTTAAATCTAAAGTTAAATCTCTGACATCATCACAGCAACTCAAATACACAGAAACGCATGTGACGTAACCTTAGCGATGGagttttaaataatgtgtttttgggtgcgttcacatttgttttttttatgtggtttgGTCTTAActagatataatcctgatactcaagatGCATGACCagatataaacagtgtttaaaagtaCCTTACCAAGAAAGGTATCGATATTTACAgttatattcttaaaaaaaaaaAAAAGTAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21406 True 1672 lncRNA 0.41 3 1586778 1636251

Neighbor

gene id symbol gene type direction distance location
LOC103032850 ppp2r1a,LOC103032850,LOC108428700,LOC108260120,LOC107691746,LOC107745127,LOC107603174,LOC107663771 coding upstream 7280 1559849 ~ 1579498 (+)
alg9 alg9,LOC107691744 coding upstream 37021 1534029 ~ 1549757 (+)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding upstream 86233 1497708 ~ 1500545 (+)
LOC103029064 LOC103029064,LOC108428730 coding upstream 116889 1457470 ~ 1469889 (+)
cryab cryab,LOC108259721 coding upstream 144669 1437806 ~ 1442109 (+)
btg4 btg4 coding downstream 28345 1664596 ~ 1669346 (+)
LOC103036563 hepacam coding downstream 551135 2187386 ~ 2203190 (+)
ccdc15 ccdc15 coding downstream 573394 2209645 ~ 2220704 (+)
slc37a2 slc37a2,LOC107691751 coding downstream 587785 2224036 ~ 2240887 (+)
LOC103037703 LOC108427349,LOC108259736,LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC571737,LOC107744331 coding downstream 608210 2244461 ~ 2259339 (+)
G15813 NA non-coding upstream 4832 1581513 ~ 1581946 (+)
G15771 NA non-coding upstream 129350 1454327 ~ 1457428 (+)
G15749 NA non-coding upstream 165970 1415182 ~ 1420808 (+)
G15748 NA non-coding upstream 174209 1409933 ~ 1412569 (+)
G15724 NA non-coding upstream 880976 686073 ~ 705802 (+)
G15845 NA non-coding downstream 93579 1729830 ~ 1730349 (+)
G15890 NA non-coding downstream 192533 1828784 ~ 1829016 (+)
G15892 NA non-coding downstream 194290 1830541 ~ 1830742 (+)
G15920 NA non-coding downstream 358174 1994425 ~ 1994863 (+)
G15932 NA non-coding downstream 437288 2073539 ~ 2073838 (+)
fdxacb1 fdxacb1 other upstream 57361 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 245978 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 1465597 70784 ~ 121181 (+)
G15839 NA other downstream 44908 1681159 ~ 1682022 (+)
nrgn NA other downstream 514379 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 2879746 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 4532509 6168760 ~ 6177884 (+)
G16820 NA other downstream 4896145 6532396 ~ 6532868 (+)

Expression


Co-expression Network