G15940


Basic Information

Item Value
gene id G15940
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 2102272 ~ 2102549 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU21567
cagcaagtctttgtgatgtaccaagagccacggtatccagggaaatgtcagcataccaccaagaaggatgaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcaggtgctaacccggattgtatccaaaaaacataaaaccacggctgcccaaatcacagcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaggacaataaattattgtggtctaaaaccaggtgtttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21567 True 278 lncRNA 0.47 1 2102272 2102549

Neighbor

gene id symbol gene type direction distance location
btg4 btg4 coding upstream 432926 1664596 ~ 1669346 (+)
LOC103032850 ppp2r1a,LOC103032850,LOC108428700,LOC108260120,LOC107691746,LOC107745127,LOC107603174,LOC107663771 coding upstream 522774 1559849 ~ 1579498 (+)
alg9 alg9,LOC107691744 coding upstream 552515 1534029 ~ 1549757 (+)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203 coding upstream 601727 1497708 ~ 1500545 (+)
LOC103029064 LOC103029064,LOC108428730 coding upstream 632383 1457470 ~ 1469889 (+)
LOC103036563 hepacam coding downstream 84837 2187386 ~ 2203190 (+)
ccdc15 ccdc15 coding downstream 107096 2209645 ~ 2220704 (+)
slc37a2 slc37a2,LOC107691751 coding downstream 121487 2224036 ~ 2240887 (+)
LOC103037703 LOC108427349,LOC108259736,LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC571737,LOC107744331 coding downstream 141912 2244461 ~ 2259339 (+)
LOC103038019 LOC108428643 coding downstream 179207 2281756 ~ 2295500 (+)
G15932 NA non-coding upstream 28434 2073539 ~ 2073838 (+)
G15920 NA non-coding upstream 107409 1994425 ~ 1994863 (+)
G15892 NA non-coding upstream 271530 1830541 ~ 1830742 (+)
G15890 NA non-coding upstream 273256 1828784 ~ 1829016 (+)
G15845 NA non-coding upstream 371923 1729830 ~ 1730349 (+)
G15947 NA non-coding downstream 27330 2129879 ~ 2130280 (+)
G15963 NA non-coding downstream 82305 2184854 ~ 2185076 (+)
G15995 NA non-coding downstream 228273 2330822 ~ 2333256 (+)
G16113 NA non-coding downstream 584748 2687297 ~ 2688041 (+)
G16141 NA non-coding downstream 804379 2906928 ~ 2907676 (+)
G15839 NA other upstream 420250 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 572855 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 761472 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 1981091 70784 ~ 121181 (+)
nrgn NA other downstream 48081 2150630 ~ 2171207 (+)
LOC103038305 NA other downstream 2413448 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 4066211 6168760 ~ 6177884 (+)
G16820 NA other downstream 4429847 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 5320022 7422571 ~ 7429391 (+)

Expression


Co-expression Network