G16229


Basic Information

Item Value
gene id G16229
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 3191560 ~ 3201320 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU21945
gttgctaagtggttgctaggcagttgctatcatttctaaagtggttgctaagtggttgctaggcagttgctaacgttttccaagtggttgctaggcagttgctaagtggttgctaggcagttgctaacattttccaggtggttgctaggcagctgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaggcagttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaggcagttgctaagtggttgctaggcagttgctaacgttttccaagtggttgctaggcagttgctaagtggttgctaggcagttgctaacgttttcaggtggttgctaaggtggttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaaggtggttgctaagcagttattaggtggttgctaagccctggctggggtgccggggtgtccaaacttttgactgatagctgctccatacagcagctcctccatacactcacagtactggaggagcaggggagagaaggggttccgtgcgcagagctgctcgtgtgtgagatggaactctgggccccccattcatttctatgggaAAACTTCGTACGACATTTGTACGAAAACCGTACGACGTATCGTCGAAACGTTAAAATTTTCGGAAAGAACGCGGTAAGTTCTATAGACCGTCCGATTTTTGTCTTTGTATGTCAAAAATTGTTACCTACACAAACGTTCAAAGTTGTcccccattcatttcctatgggaaaaaaaagcgtACGTTTACGAA
>TU21947
gtggttgctaaggtgttgctaggcagttgctaagtggttgctaggcagttgctaacgttttccaagtggttgctaggcagttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaaggtggttgctaagcagttattaggtggttgctaagccctggctggggtgccggggtgtccaaacttttgactgatagctgctccatacagcagctcctccatacactcacagtactggaggagcaggggagagaaggggttccgtgcgcagagctgctcgtgtgtgagatggaactctgggccccccattcatttctatgggaAAACTTCGTACGACATTTGTACGAAAACCGTACGACGTATCGTCGAAACGTTAAAATTTTCGGAAAGAACGCGGTAAGTTCTATAGACCGTCCGATTTTTGTCTTTGTATGTCAAAAATTGTTACCTACACAAACGTTCAAAGTTGTcccccattcatttcctatgggaaaaaaaagcgtACGTTTACGAA
>TU21948
aagtggttgctaggcagttgctatcgtttctaaggtggttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaaggtggttgctaagcagttattaggtggttgctaagccctggctggggtgccggggtgtccaaacttttgactgatagctgctccatacagcagctcctccatacactcacagtactggaggagcaggggagagaaggggttccgtgcgcagagctgctcgtgtgtgagatggaactctgggccccccattcatttctatgggaAAACTTCGTACGACATTTGTACGAAAACCGTACGACGTATCGTCGAAACGTTAAAATTTTCGGAAAGAACGCGGTAAGTTCTATAGACCGTCCGATTTTTGTCTTTGTATGTCAAAAATTGTTACCTACACAAACGTTCAAAGTTGTcccccattcatttcctatgggaaaaaaaagcgtACGTTTACGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21945 True 855 lncRNA 0.40 2 3200292 3201320
TU21947 False 524 lncRNA 0.48 2 3193500 3201320
TU21948 False 482 lncRNA 0.42 2 3191560 3201320

Neighbor

gene id symbol gene type direction distance location
LOC103038960 dtx2,LOC107600799,LOC107691768,LOC108260301,LOC107689380,LOC107709752 coding upstream 306252 2868786 ~ 2885308 (+)
gtf2ird1 gtf2ird1,LOC107600764 coding upstream 323569 2836700 ~ 2867991 (+)
clip2 clip2,LOC107709754,LOC107744329 coding upstream 357004 2780166 ~ 2834556 (+)
LOC103040420 rasa4,LOC108428505,LOC108260369,LOC107561580,LOC107744328,LOC107709756,LOC107691765 coding upstream 416487 2729294 ~ 2775073 (+)
LOC103040935 LOC103040935 coding upstream 472147 2712371 ~ 2719413 (+)
tmem132e tmem132e,LOC107691770,LOC107689377 coding downstream 413420 3614740 ~ 3783011 (+)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding downstream 749029 3950349 ~ 3969225 (+)
tmem248 tmem248 coding downstream 775238 3976558 ~ 3987439 (+)
LOC103022138 LOC108428416,LOC108260357,LOC107714896,LOC107691814,LOC107572424 coding downstream 797109 3998429 ~ 4087460 (+)
LOC111191780 NA coding downstream 919164 4120484 ~ 4122075 (+)
G16230 NA non-coding upstream 246 3190412 ~ 3191314 (+)
G16204 NA non-coding upstream 175139 3015422 ~ 3016421 (+)
G16141 NA non-coding upstream 283884 2906928 ~ 2907676 (+)
G16113 NA non-coding upstream 503519 2687297 ~ 2688041 (+)
G15995 NA non-coding upstream 858304 2330822 ~ 2333256 (+)
G16237 NA non-coding downstream 2634 3203954 ~ 3204293 (+)
G16239 NA non-coding downstream 40064 3241384 ~ 3241587 (+)
G16241 NA non-coding downstream 41578 3242898 ~ 3247786 (+)
LOC111194589 NA non-coding downstream 76194 3277514 ~ 3346662 (+)
G16343 NA non-coding downstream 709742 3911062 ~ 3989550 (+)
nrgn NA other upstream 1020353 2150630 ~ 2171207 (+)
G15839 NA other upstream 1509538 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 1662143 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 1850760 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 3070379 70784 ~ 121181 (+)
LOC103038305 NA other downstream 1314677 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 2967440 6168760 ~ 6177884 (+)
G16820 NA other downstream 3331076 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 4221251 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 4967519 8168839 ~ 8184837 (+)

Expression


Co-expression Network