G16237


Basic Information

Item Value
gene id G16237
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 3203954 ~ 3204293 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU21989
cgtattgtaggttctcctctttacaaagcgttctatatctcttgtctcagtttatcttgtgtatgaccttgcttttgttttctcgacgccgattattgcctttgcctctgatactggattgtttgtgtatgacttggactgtgttttcactactgcctcttggattacctctgatactggattgctcgtgtatgaactctggactggttATCGTTTCTGGTATGGTTTTGCCTTCAttactctgtttactggtgatcacccattTCTCTGTATCGactctgattacatctgtttattcttataataaacacattttgattttatcagtatctgcacgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21989 True 340 lncRNA 0.53 1 3203954 3204293

Neighbor

gene id symbol gene type direction distance location
LOC103038960 dtx2,LOC107600799,LOC107691768,LOC108260301,LOC107689380,LOC107709752 coding upstream 318646 2868786 ~ 2885308 (+)
gtf2ird1 gtf2ird1,LOC107600764 coding upstream 335963 2836700 ~ 2867991 (+)
clip2 clip2,LOC107709754,LOC107744329 coding upstream 369398 2780166 ~ 2834556 (+)
LOC103040420 rasa4,LOC108428505,LOC108260369,LOC107561580,LOC107744328,LOC107709756,LOC107691765 coding upstream 428881 2729294 ~ 2775073 (+)
LOC103040935 LOC103040935 coding upstream 484541 2712371 ~ 2719413 (+)
tmem132e tmem132e,LOC107691770,LOC107689377 coding downstream 410447 3614740 ~ 3783011 (+)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding downstream 746056 3950349 ~ 3969225 (+)
tmem248 tmem248 coding downstream 772265 3976558 ~ 3987439 (+)
LOC103022138 LOC108428416,LOC108260357,LOC107714896,LOC107691814,LOC107572424 coding downstream 794136 3998429 ~ 4087460 (+)
LOC111191780 NA coding downstream 916191 4120484 ~ 4122075 (+)
G16229 NA non-coding upstream 2634 3191560 ~ 3201320 (+)
G16230 NA non-coding upstream 12640 3190412 ~ 3191314 (+)
G16204 NA non-coding upstream 187533 3015422 ~ 3016421 (+)
G16141 NA non-coding upstream 296278 2906928 ~ 2907676 (+)
G16113 NA non-coding upstream 515913 2687297 ~ 2688041 (+)
G16239 NA non-coding downstream 37091 3241384 ~ 3241587 (+)
G16241 NA non-coding downstream 38605 3242898 ~ 3247786 (+)
LOC111194589 NA non-coding downstream 73221 3277514 ~ 3346662 (+)
G16343 NA non-coding downstream 706769 3911062 ~ 3989550 (+)
G16399 NA non-coding downstream 912849 4117142 ~ 4117476 (+)
nrgn NA other upstream 1032747 2150630 ~ 2171207 (+)
G15839 NA other upstream 1521932 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 1674537 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 1863154 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 3082773 70784 ~ 121181 (+)
LOC103038305 NA other downstream 1311704 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 2964467 6168760 ~ 6177884 (+)
G16820 NA other downstream 3328103 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 4218278 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 4964546 8168839 ~ 8184837 (+)

Expression


Co-expression Network