G16239


Basic Information

Item Value
gene id G16239
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 3241384 ~ 3241587 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU21991
atcctggctctctttccgcgcttccgcttacactcgcaccgcttgcgatggcacttccgctgggctccggcgtcaggaaacaccgcgggctggcggcctgggtctcttagcaggctaagctcaagtagcgtctgcagaacctcgtccggtagcgtgttttctggctgatttctccactgtagcagggtctggcggtggtagaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21991 True 204 lncRNA 0.41 1 3241384 3241587

Neighbor

gene id symbol gene type direction distance location
LOC103038960 dtx2,LOC107600799,LOC107691768,LOC108260301,LOC107689380,LOC107709752 coding upstream 356076 2868786 ~ 2885308 (+)
gtf2ird1 gtf2ird1,LOC107600764 coding upstream 373393 2836700 ~ 2867991 (+)
clip2 clip2,LOC107709754,LOC107744329 coding upstream 406828 2780166 ~ 2834556 (+)
LOC103040420 rasa4,LOC108428505,LOC108260369,LOC107561580,LOC107744328,LOC107709756,LOC107691765 coding upstream 466311 2729294 ~ 2775073 (+)
LOC103040935 LOC103040935 coding upstream 521971 2712371 ~ 2719413 (+)
tmem132e tmem132e,LOC107691770,LOC107689377 coding downstream 373153 3614740 ~ 3783011 (+)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding downstream 708762 3950349 ~ 3969225 (+)
tmem248 tmem248 coding downstream 734971 3976558 ~ 3987439 (+)
LOC103022138 LOC108428416,LOC108260357,LOC107714896,LOC107691814,LOC107572424 coding downstream 756842 3998429 ~ 4087460 (+)
LOC111191780 NA coding downstream 878897 4120484 ~ 4122075 (+)
G16237 NA non-coding upstream 37091 3203954 ~ 3204293 (+)
G16229 NA non-coding upstream 40064 3191560 ~ 3201320 (+)
G16230 NA non-coding upstream 50070 3190412 ~ 3191314 (+)
G16204 NA non-coding upstream 224963 3015422 ~ 3016421 (+)
G16141 NA non-coding upstream 333708 2906928 ~ 2907676 (+)
G16241 NA non-coding downstream 1311 3242898 ~ 3247786 (+)
LOC111194589 NA non-coding downstream 35927 3277514 ~ 3346662 (+)
G16343 NA non-coding downstream 669475 3911062 ~ 3989550 (+)
G16399 NA non-coding downstream 875555 4117142 ~ 4117476 (+)
G16400 NA non-coding downstream 876985 4118572 ~ 4118795 (+)
nrgn NA other upstream 1070177 2150630 ~ 2171207 (+)
G15839 NA other upstream 1559362 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 1711967 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 1900584 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 3120203 70784 ~ 121181 (+)
LOC103038305 NA other downstream 1274410 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 2927173 6168760 ~ 6177884 (+)
G16820 NA other downstream 3290809 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 4180984 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 4927252 8168839 ~ 8184837 (+)

Expression


Co-expression Network