LOC103038305


Basic Information

Item Value
gene id LOC103038305
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 4515997 ~ 4517309 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22208
AAAAAAacgagaaataacaaaaaagatgaagagctttcagacctcaaatgttgcaaagaaaacaagttcaatcaatttttggtggaataaccctgttttggAATCGTAGTTTTCatggatcttggcatgttctcctccaccagtcttacacacactgcttttggataatttaatgccacccctggtgcaaaaattcaagcaggtcagcttggtttgatggcttgtgatcatccatcttcctcttgattattatttcagaggttttcaatttggtaagatcaaggaaaaacattattaaaaatctaattttttcagagttgaatgttttgcaaaaataacctgaaatactGCCACCCCTAAATTGCATGAGAACCTAGAGTGTTTTGATGTAAATAACCTATTGAATATTGATTCTGAATGTCTCTGCAGGTGTTCACCGACAGGCATTGTTCGTTACTGTTGGCTGGGTTCTTGGCTACTATTGCACGAAGTTTGAAAACTATGTGTACGCCAAGTTAGACAGAGACATGAACGAATATGTCCAAATACACCCTGAGTTGTTCCCACAGAAAGAAAAGAAGACATTTGCAGAGATTGTGGAGCCATTTCATCCCATCCGTTGAGTGGACCTGGTTGTCACACCTGTGACATATGTGAAGAACATCCTGGAAGTTTGCTTGTCAATCTCCACTTATCTTTTGATACTGTGGCACAGCTTTCCAAAATTATACAGTGTATCATATTGATTCATTCTTAAATATGttatttctaatatttcattaaacaattaaaaaacaacatatattgTTAATTGAGTATTCTtccacatttacatttatcc
>XM_022667716.1
ATATTGATTCTGAATGTCTCTGCAGGTGTTCACCGACAGGCATTGTTCGTTACTGTTGGCTGGGTTCTTGGCTACTATTGCACGAAGTTTGAAAACTATGTGTACGCCAAGTTAGACAGAGACATGAACGAATATGTCCAAATACACCCTGAGTTGTTCCCACAGAAAGAAAAGAAGACATTTGCAGAGATTGTGGAGCCATTTCATCCCATCCGTTGAGTGGACCTGGTTGTCACACCTGTGACATATGTGAAGAACATCCTGGAAGTTTGCTTGTCAATCTCCACTTATCTTTTGATACTGTGGCACAGCTTTCCAAAATTATACAGTGTATCATATTGATTCATTCTTAAATATGttatttctaatatttcattaaacaattaaaaaacaaca

Function

GO:

id name namespace
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22208 True 841 lncRNA 0.36 2 4515997 4517309
XM_022667716.1 False 396 mRNA 0.38 2 4516401 4517268

Neighbor

gene id symbol gene type direction distance location
LOC111191780 NA coding upstream 393922 4120484 ~ 4122075 (+)
LOC103022138 LOC108428416,LOC108260357,LOC107714896,LOC107691814,LOC107572424 coding upstream 428537 3998429 ~ 4087460 (+)
tmem248 tmem248 coding upstream 528558 3976558 ~ 3987439 (+)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 546772 3950349 ~ 3969225 (+)
tmem132e tmem132e,LOC107691770,LOC107689377 coding upstream 732986 3614740 ~ 3783011 (+)
LOC103036617 rcbtb2 coding downstream 203114 4720423 ~ 4735653 (+)
LOC103034847 LOC108426960 coding downstream 233144 4750453 ~ 4753398 (+)
cog6 cog6,LOC107699813,LOC107670561 coding downstream 444605 4961914 ~ 5030716 (+)
LOC103032405 slc25a15,slc25a15a,LOC107561472,LOC107670691,LOC107593465 coding downstream 669188 5186497 ~ 5195523 (+)
LOC103032089 stoml3,LOC102781741,LOC105011208,LOC108236983 coding downstream 681382 5198691 ~ 5208963 (+)
G16400 NA non-coding upstream 397202 4118572 ~ 4118795 (+)
G16399 NA non-coding upstream 398521 4117142 ~ 4117476 (+)
G16343 NA non-coding upstream 526447 3911062 ~ 3989550 (+)
LOC111194589 NA non-coding upstream 1169335 3277514 ~ 3346662 (+)
G16241 NA non-coding upstream 1268211 3242898 ~ 3247786 (+)
G16410 NA non-coding downstream 7419 4524728 ~ 4526329 (+)
G16414 LOC107833664 non-coding downstream 17662 4534971 ~ 4535236 (+)
G16430 NA non-coding downstream 38006 4555315 ~ 4555551 (+)
G16431 NA non-coding downstream 39961 4557270 ~ 4560034 (+)
G16439 LOC108426957,LOC107740387,LOC107593468 non-coding downstream 86258 4603567 ~ 4605993 (+)
nrgn NA other upstream 2344790 2150630 ~ 2171207 (+)
G15839 NA other upstream 2833975 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 2986580 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 3175197 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 4394816 70784 ~ 121181 (+)
LOC103025913 NA other downstream 1651451 6168760 ~ 6177884 (+)
G16820 NA other downstream 2015087 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 2905262 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 3651530 8168839 ~ 8184837 (+)
G17414 NA other downstream 4158310 8675619 ~ 8716787 (+)

Expression


Co-expression Network