G16815


Basic Information

Item Value
gene id G16815
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6605267 ~ 6643077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22716
AAGAaatcagataatgcaaagaaaacaattaaatattcataaagttttaagagttcagaaatcaatatttgcaaagaaaacaagttcatattcatcaagttttaagagttcagaaatcaatatttggtggaataaaactgttttttaatcacagtttaatcacaatgtgtcttggcatgttcttctcctccagtcttacacactgcttttggataattttatgccactcctggtgcaaaaattcaagcagttcatccaTCCTCTTGGTTatactccagaggttttcaatttggcaaaatcaaagaaactcagcatttttaggtggtctcttatttttgtccagagctgtatgtgagaaaaatgtgtgaaataaaTGTGCTAAAAGGGAGTAGCACAAAAGACTAGCACAACAGTGTTGAGCCTTTTTCTGTGTAATTAAACAGTAATCTTACTTAACTTCCTCTTAAGCAAACATGAAAAGTACAGAACTCTTTTGCTGAAGCGCTGTACATCATTCCATGTGTAGAAGGTGACCTTAATTTCCAAAAGGCacaaagttaaagttaaagatgaaactttctttttaaaattgaaAGCAAGCTGTCACACTCCCCTGACCTCAATATCATCCTAAAAATCTGTATAAAAGAACAGTTCTTGCAGGATGACCCAAGAATCTGACTCAATAACGAGCCTTTTGCAAGGAAGAATCTACTGACAGTTTATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22716 True 728 lncRNA 0.34 2 6605267 6643077

Neighbor

gene id symbol gene type direction distance location
frrs1l frrs1l,LOC107595962 coding upstream 1392 6593467 ~ 6603875 (+)
alg2 alg2,LOC107595974,LOC107706186 coding upstream 53266 6544275 ~ 6552001 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132 coding upstream 281372 6293072 ~ 6323895 (+)
tex10 tex10,LOC107706105,LOC107689903 coding upstream 375808 6185481 ~ 6229459 (+)
LOC103023602 LOC107579097 coding upstream 525216 6049397 ~ 6080051 (+)
trnat-ugu NA coding downstream 7628 6650705 ~ 6650777 (+)
trnat-ugu_1 NA coding downstream 8903 6651980 ~ 6652052 (+)
trnat-ugu_2 NA coding downstream 10507 6653584 ~ 6653656 (+)
trnat-ugu_3 NA coding downstream 11796 6654873 ~ 6654945 (+)
trnat-ugu_4 NA coding downstream 13479 6656556 ~ 6656628 (+)
G16831 NA non-coding upstream 27962 6576991 ~ 6577305 (+)
G16829 NA non-coding upstream 30042 6574946 ~ 6575225 (+)
G16828 NA non-coding upstream 30491 6574537 ~ 6574776 (+)
G16824 NA non-coding upstream 66287 6536879 ~ 6538980 (+)
LOC111194764 NA non-coding upstream 166385 6415862 ~ 6438882 (+)
G16811 NA non-coding downstream 107 6643184 ~ 6645997 (+)
G16838 galnt1,LOC107723435,LOC107657719 non-coding downstream 31638 6674715 ~ 6684107 (+)
G16839 galnt1,LOC107593713,LOC107657719 non-coding downstream 46643 6689720 ~ 6800136 (+)
G16845 NA non-coding downstream 258145 6901222 ~ 6901911 (+)
G16968 NA non-coding downstream 283694 6926771 ~ 6927019 (+)
G16820 NA other upstream 72399 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 427383 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 2087958 4515997 ~ 4517309 (+)
nrgn NA other upstream 4434060 2150630 ~ 2171207 (+)
G15839 NA other upstream 4923245 1681159 ~ 1682022 (+)
LOC103032995 NA other downstream 779494 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 1525762 8168839 ~ 8184837 (+)
G17414 NA other downstream 2032542 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 2248167 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 2256863 8899940 ~ 8904004 (+)

Expression


Co-expression Network