G16829


Basic Information

Item Value
gene id G16829
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6574946 ~ 6575225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22731
gcagaggtctagctaaaggaatacggttttcacaccacacacactgcactcattCTGCTGAGGAAATTATAACTATTTTTACTAACAAGTACATctttacacattactgtaggtagaaagaaaagaaaatactaaggaaaatgtatcaaatatactatgtatacaaaatacaaaaacctgcaaagacaaaacaaaatacattacagtatgtaaaaaaacagtcaagcatcacaaatgcaatacagtaacattctgactactctgtgtcactcccctatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22731 True 280 lncRNA 0.33 1 6574946 6575225

Neighbor

gene id symbol gene type direction distance location
alg2 alg2,LOC107595974,LOC107706186 coding upstream 22945 6544275 ~ 6552001 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132 coding upstream 251051 6293072 ~ 6323895 (+)
tex10 tex10,LOC107706105,LOC107689903 coding upstream 345487 6185481 ~ 6229459 (+)
LOC103023602 LOC107579097 coding upstream 494895 6049397 ~ 6080051 (+)
tbrg4 NA coding upstream 542203 6012790 ~ 6032743 (+)
frrs1l frrs1l,LOC107595962 coding downstream 18242 6593467 ~ 6603875 (+)
tmem245 tmem245,LOC107687814,LOC107706205,LOC107723436,LOC107595951 coding downstream 31760 6606985 ~ 6641935 (+)
trnat-ugu NA coding downstream 75480 6650705 ~ 6650777 (+)
trnat-ugu_1 NA coding downstream 76755 6651980 ~ 6652052 (+)
trnat-ugu_2 NA coding downstream 78359 6653584 ~ 6653656 (+)
G16828 NA non-coding upstream 170 6574537 ~ 6574776 (+)
G16824 NA non-coding upstream 35966 6536879 ~ 6538980 (+)
LOC111194764 NA non-coding upstream 136064 6415862 ~ 6438882 (+)
G16799 NA non-coding upstream 214478 6357564 ~ 6360468 (+)
G16779 NA non-coding upstream 341850 6231265 ~ 6233096 (+)
G16831 NA non-coding downstream 1766 6576991 ~ 6577305 (+)
G16815 NA non-coding downstream 30042 6605267 ~ 6643077 (+)
G16811 NA non-coding downstream 67959 6643184 ~ 6645997 (+)
G16838 galnt1,LOC107723435,LOC107657719 non-coding downstream 99490 6674715 ~ 6684107 (+)
G16839 galnt1,LOC107593713,LOC107657719 non-coding downstream 114495 6689720 ~ 6800136 (+)
G16820 NA other upstream 42078 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 397062 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 2057637 4515997 ~ 4517309 (+)
nrgn NA other upstream 4403739 2150630 ~ 2171207 (+)
G15839 NA other upstream 4892924 1681159 ~ 1682022 (+)
LOC103032995 NA other downstream 847346 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 1593614 8168839 ~ 8184837 (+)
G17414 NA other downstream 2100394 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 2316019 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 2324715 8899940 ~ 8904004 (+)

Expression


Co-expression Network