G16845


Basic Information

Item Value
gene id G16845
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6901222 ~ 6901911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22749
CAGCATCTCGttacaaaaagaaaatttaccaaaaacaaccacaacatataataagcaaaacaaaaacaaaacatacaataaGCAAAACAGGCAAAACATACAATAAGCTAAACAAACACAGACTTACACATAGCACAAATATCTTTACAGTTTCTTAAAATCTCTGTGCCTTATTCGTTCTATTTGCTTGTGTTATTGCTGCAGGGATAAAACTGTCTTTGTATCGTTTTGTTCTACATCTTGGTACTCTAAACCTCTGACCAGATGGGAGTGACCTAAATTCACTATGCAGGGGATGAGCAGTATCCCCCAAAATTGCACCAGTTACCCGCTTTAACTGTCTGCCATACAAGGATTCCACGCTGAGTAGCGGCTTACCAATCAGCTTACTTGCCCATTTTACGATCTGATTCAAGCCCTTCCTCTTTTTAAATGGCAAATTACCAAACCATGCAACCATGGAAAAAGCTAAAACTGGTTCGATAAAAGCCTGATAAAATAAAGTCATCATCGTCTTATCAACGTGGAAGTAGTTCAGTTTTCTCAGACAATGCAACCGCTGCTGCCCCTTTTTACACACCGCCTCTGTGTTTGCTTCAAAATTCAATTTAGAATCAATTACTGTACCAAGATATTTATAGTGTTGTACACATTCTACTATCTGACCATTAATAACTGTAGCCTCCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22749 True 690 lncRNA 0.38 1 6901222 6901911

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_6 NA coding upstream 233329 6667821 ~ 6667893 (+)
trnat-ugu_5 NA coding upstream 241749 6659401 ~ 6659473 (+)
trnat-ugu_4 NA coding upstream 244594 6656556 ~ 6656628 (+)
trnat-ugu_3 NA coding upstream 246277 6654873 ~ 6654945 (+)
trnat-ugu_2 NA coding upstream 247566 6653584 ~ 6653656 (+)
ino80c ino80c coding downstream 16147 6918058 ~ 6922362 (+)
pdp1 pdp1,LOC107706250,LOC107687812,LOC107595893,LOC107593682 coding downstream 89992 6991903 ~ 7001192 (+)
LOC103046513 rnf41l,LOC108443277,LOC107593678,LOC107723454,LOC107687809 coding downstream 199670 7101581 ~ 7111945 (+)
esrp1 esrp1,LOC107593677,LOC107706288,LOC107657715 coding downstream 240457 7142368 ~ 7172757 (+)
LOC103022302 LOC108431077 coding downstream 397760 7299671 ~ 7307085 (+)
G16839 galnt1,LOC107593713,LOC107657719 non-coding upstream 101086 6689720 ~ 6800136 (+)
G16838 galnt1,LOC107723435,LOC107657719 non-coding upstream 217115 6674715 ~ 6684107 (+)
G16811 NA non-coding upstream 255225 6643184 ~ 6645997 (+)
G16815 NA non-coding upstream 258145 6605267 ~ 6643077 (+)
G16831 NA non-coding upstream 323917 6576991 ~ 6577305 (+)
G16968 NA non-coding downstream 24860 6926771 ~ 6927019 (+)
G16969 NA non-coding downstream 46159 6948070 ~ 7049298 (+)
G17062 NA non-coding downstream 435520 7337431 ~ 7339982 (+)
G17070 NA non-coding downstream 449707 7351618 ~ 7355186 (+)
G17180 NA non-coding downstream 533990 7435901 ~ 7436615 (+)
G16820 NA other upstream 368354 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 723338 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 2383913 4515997 ~ 4517309 (+)
nrgn NA other upstream 4730015 2150630 ~ 2171207 (+)
G15839 NA other upstream 5219200 1681159 ~ 1682022 (+)
LOC103032995 NA other downstream 520660 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 1266928 8168839 ~ 8184837 (+)
G17414 NA other downstream 1773708 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 1989333 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 1998029 8899940 ~ 8904004 (+)

Expression


Co-expression Network