G16969


Basic Information

Item Value
gene id G16969
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6948070 ~ 7049298 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22914
tttatatatatatatatatatatatatatatatatataagttatttgtaaaatgttttgtcattgtatttgaaattcattttaattttaatttggcTATTCTGTCCATGTTCTCTGCACTGCAGAAATCATAGGGCCCTATAAGTCAtaatgtataaaagtataattaGGTTGAGATTATAGGTAGCATATACTTAAAAAGGTGgcataaaagtttttttgttcacaCTCTGTTCACAATCTGAATCAGATTTCATGCCACATAAAACAAAGATCAAATCAAATTGAAAAAGCAAGATTTGGCCTTGTTGGTATTGTTCACAATAAAAAAGTCCGTCCTTTTCAAATGTATTATGCCAATGAATCAGATTTGAGCTGCTGGGAGCAATGTTGTAGaagaaataattttaaaagacattttaaaggtttaaagaacTGTCGCATCACTAACTAAAAGGTTTTCTCACTTatttataaaagtgtttttctaaAGAACCAAAAGGGACAAAAGGgttcaatgtttattattaGCTATTGGATAAAGACTTTTGTACCATGGTCTGGGTTGACGTACATAgatataggtttatgtttggaaGAATTATGTAAAACTGGGCATCTTTTGTCATAAGactcttaatttatttgataGATCCAGGATACAGGAAGTTTTTTGACCTGGGAAATATAATAGTGACACGGTTGAGGAGTTTGTGTTAGGACAGTTTGTATAGTCCAAAACAGAACATGACTGTACTCACATATAATAAGTTACAAGGAGAACCTCTTATGTGCACAGCTACACTGTATTACCAGCCAATTTTAAAATACACCCCTCCCTTCCTTCCTCCCTCTGAGGTCAGACAGTACAGTCTCTTTGTGAATTTCAGAGAGAAAGTAAATTGAAACAGAGGCTGAACTGAACGAACCACCACGTGCGCATGTGACGACCGAGGGCGCAACTGGACACGGCATCTAGAGCATGACGGTGGTTTCCCCGTCAGCCATGTTTTTGTCCTTCTTCTTGTCATTCTTCTTGATGCGGTAAATGACGATGATCAGGAGCAGCAC
>TU22916
ttttctttttttttcacttttcacacatttatttattgtttagaGTACAGTGTTGCTGAAATGtttatattcttatttaaaGGGGATGTTTATTAACAGAACAAAAAGATGTGACTTATAGTTCATGTAATAGAGAATAACTTTCTATTCTGAAGAGAGTGTATAAAGCTGAATAAGAGACCCTTGGTTTCAAAACTTCAGCATGATTTCAACACTTTTATACTGATTTTACATTATAAGAATAGATATAAGATTATACCTAGCATTACAGTAAAGCACTTATTACACTAACAGAGCATGCAGCAGTACAGACCCGCactgatcacactcacacaaaatcaacacaatcaccatcatcatcataatcatcttcAGTAGCAGCAGGTAATAGCGAAGACCAGCCTCCTCAGCTGGAGAATACAGGCAGAGAGCAGATGGAGTGTTAATGATAAAACAGCTAGCTAAATAAGCTCCTTCATAATTTATTCCACCCTCTTAAACAAgagggtctaaaagggttaattaGTAAAGGCAATGGGGAGATGATACAGGATAAGATAAAAACTAATCCTGCACCTAATAATTGGGGTTACACACAGGGCCCAGCCCAATTGTTCCATTTATATTCTACCTCACAAGCTCTTCATTATCAGATAATCAGATAATGTTTCTGTACTGTCACACCACACATCACACAAaaatctctctgtatctcacttACTAATTCTCTCAAtgaaaaatcaatgtaaaaagatgaTTTTCCTGTTTCTGCCGTATATTGtactatattaaataatacaggattgtttttaccatattttatcaGAAATCAATGAACATGTCATGAACATAAAAAGGTGTTTAGGCAGATATAATCTAACTCTCATAGATATGTTATATAAAACTTTTTATGAAAGTCATGGAATTACATGCATGCTTTGTCTTACATGATATTGCACATCCTGTGATATTATTATTGTGCATGTGAACATTGTGATGACAACGACAAAACTATAcacatatagtatatatatagtatgtatatatatatatatatgcagcactaatttctattggtccatttatcacaaaaatatgGCACAGTGTAAAGATCAACTGTCAGAAAAATGGAGAGAGTCAGGTACAGTAAAAATGGTTGAGCTGCTGTTATGGGTCAAAGATTATACGAGCTGCCTAAATATTTAGAGGGCATTAACATCTTAtctaattaagatttttatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22914 False 1070 lncRNA 0.51 2 7004126 7020232
TU22916 True 1272 lncRNA 0.51 3 6948070 7049298

Neighbor

gene id symbol gene type direction distance location
ino80c ino80c coding upstream 25708 6918058 ~ 6922362 (+)
trnat-ugu_6 NA coding upstream 280177 6667821 ~ 6667893 (+)
trnat-ugu_5 NA coding upstream 288597 6659401 ~ 6659473 (+)
trnat-ugu_4 NA coding upstream 291442 6656556 ~ 6656628 (+)
trnat-ugu_3 NA coding upstream 293125 6654873 ~ 6654945 (+)
LOC103046513 rnf41l,LOC108443277,LOC107593678,LOC107723454,LOC107687809 coding downstream 52283 7101581 ~ 7111945 (+)
esrp1 esrp1,LOC107593677,LOC107706288,LOC107657715 coding downstream 93070 7142368 ~ 7172757 (+)
LOC103022302 LOC108431077 coding downstream 250373 7299671 ~ 7307085 (+)
LOC103022811 LOC108431076,LOC108256683 coding downstream 262004 7311302 ~ 7323743 (+)
LOC103023753 NA coding downstream 278040 7327338 ~ 7333674 (+)
G16968 NA non-coding upstream 21051 6926771 ~ 6927019 (+)
G16845 NA non-coding upstream 46159 6901222 ~ 6901911 (+)
G16839 galnt1,LOC107593713,LOC107657719 non-coding upstream 147934 6689720 ~ 6800136 (+)
G16838 galnt1,LOC107723435,LOC107657719 non-coding upstream 263963 6674715 ~ 6684107 (+)
G16811 NA non-coding upstream 302073 6643184 ~ 6645997 (+)
G17062 NA non-coding downstream 288133 7337431 ~ 7339982 (+)
G17070 NA non-coding downstream 302320 7351618 ~ 7355186 (+)
G17180 NA non-coding downstream 386603 7435901 ~ 7436615 (+)
G17204 NA non-coding downstream 583614 7632912 ~ 7692401 (+)
G17206 NA non-coding downstream 645020 7694318 ~ 7704025 (+)
G16820 NA other upstream 415202 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 770186 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 2430761 4515997 ~ 4517309 (+)
nrgn NA other upstream 4776863 2150630 ~ 2171207 (+)
G15839 NA other upstream 5266048 1681159 ~ 1682022 (+)
LOC103032995 NA other downstream 373273 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 1119541 8168839 ~ 8184837 (+)
G17414 NA other downstream 1626321 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 1841946 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 1850642 8899940 ~ 8904004 (+)

Expression


Co-expression Network