LOC103041197


Basic Information

Item Value
gene id LOC103041197
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8168839 ~ 8184837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23385
TTCGCACCTGCTAATTTGAGTGTTCTGTTGATCTGTGCTTTTACCTCACCTCATGTTTcttcattcattaatttctcTTTTCTATGAATGTGTTCTCCAGCTTCTGTTATTTCAGATCCTGTCCAGCAGATCAGCCAAAGCCACCACCTACAACCACATCATCAGCAGGGGTACACAGCTGTTCAAACTGTTCAGTCTACGCCACATTTAGACATAATGGTGAgagatctttttttgttttctgtttttttaagacCTACACCACCAACATACCTGTGCCCAACTTTTCTTACCATATATTGAGTACAATACTCAAtgcGTGCGTTTcgacggagatccacgtaaaaacaacagcgagtgga
>XM_022679854.1
ATGGATGAAACTGACTCTGAGTCAGATCTGTCTAACTGCCTCTATTCTCAGATGGCTGAGACAATTCAGACTCGTTTTGCAAAAGAGTTGGCTCCTACATTAAGTGAGTATCAGTACAAACAGGAAGGGAAAAAGGAGCTTGCAAACTGCCTCTATGCCCTCCTGcctaaaaccagagaaacacaGCATGCCAAGGAGCTCTCTCAGCTCTACAGCAAGAAACATTATAAAGAAGGAGGGAAGAAGGATGCAGAAGCATGTCTTTATGCTCAGATGCCACAGACTATTGAGACAGTGTTTGCTAAGGAAGTGACCAATCATCAGAGTAACAAACTCTACAAGGAAAAATACAATGCAGAGAAAGGGAAGTCCCTCTATGCCTCCATGAAAACACTGCCAGCTATGGAGCACGCCATGGAGGTCAACAAGGAGCAGAGCAATGTGAACTATAGAAAAGGGATTCAACAGGTTCACAAGTTCCATGAAGTAGCAGACAGGCCAGACATCCTGAGAGCCATTCAAGCTACGAAACTAGCCAGTAATGTGGCCTATAAAAATAAGGTGGACACCTTTAAAGAACAGGCACTTTTGCAGAGACCTGATATTGACCACGCCATGCAAGCGGCTAAAATTGCCAGCAAGGTTCACTACAAGCAGAAGTTTGAAGGAGACCAGAGAGCCCACAAGCCAGTGTACAATCCCAGTGACTGCTTATCATTTAAACACGCAAAAGCTGCCACAGCACTTATCAGTCAGGTGCAGTATAGGAAGAAGTATGAAGAGGCTAAGGGACAGTATCACTTCTCCCTGAACACAGCAGAACATCTCCACCATAAAGAGAATAGTGTTCTGCAGAGTCAGGTGAGGTACAGACAGGACTATGAGAAGAATAAGAGTAAAGTGAAGATGGAGTTTGGAGACACGCAGTTCTACAGAGTGTCCAAAGAGGCTCAGAAACTGCAGAGTAAGAAGGAGTACTGTAAAGACTACGAGAACTGCATTAAAGGAAAAGTTCAGATGGATGTAGAATCAACACCTGGATACCTGAGTGCATGCAGTGCCAACAGACTCCTGAGTGAgAAGGAGTACTGTAAGGACCTGAAGACGGAGATCATAGGGAAGCGTGTGGATATTGGGACTGATGCAGTGGAGATACAGAGAGCTATGAAAACATCAGAAATAACCAGCCAGAAAAAGTATAAGGATAATGCAGAGACGCTGAAGTGCTCGTATGCTGTGATGCCGGATACACCAGAAATGGAGAGAGCCAAGATCAACCAGCGCAACATCAGTTCAgtGAGGTACTCTTGGGATGTAAAGCATATGAAGAGGCTGACGCTGGCTGTAACTGAGACTCCAGAGATTATACTGGCTAAAGAGAACACCAAGAAGATCAGCAACgTAAAGTACAGGGAGGAGGTGGGGAGTGGGATATCAGTAAAGGACACCCTTGAAATGGAAAGAGTTCGGAGGAACCAGATGAACATTAGCTCAGTAAAGTATCGTGAGGACTTTGAGCGGACACGTGGGAGGAGCTGCACTCCTGCTCTGAAAAACACTGGTACtgGCCGACAGGTGTGGAGAACTGATCCAGGCTCCATATTTGACTTTGATCCTGTGGAGGACAATATTCAGTCTAGAAGCCTGCGCAGAATGTCTGAGCGGCCAGGTCACGTCAGCAGGCACTCTGTGCTTTCCTGTGCTGAGTCTGTGTGCCGCTCATCGGTATCTGAGGAATGGGGCGATGAGAGCACGTCTTCAAACAGCAGCATGTCCACATTGCGGAACACACCCAGCACAGCTTCTGTTATTTCAGATCCTGTCCAGCAGATCAGCCAAAGCCACCACCTACAACCACATCATCAGCAGGGGTACACAGCTGTTCAAACTGTTCAGTCTACGCCACATTTAGACATAATGAGAGTGTATCGCGCTCTGTATGATTACACAGCTCAAGATCATGATGAGGTCTCCTTTCAGGACGGTGATGTCATCATCAGCCTGCAGCCGGTTGATGAAGGCTGGATGTACGGCACTGTACAGAGAACAGGACAGGCTGGCATGCTGCCAGCTAATTATGTGGAGTGTTTAAGTTAAAACTGACTGTCAGATTAATTCACaccagcatgtgtgtgtttcactGTTATGTTAGTGCTTATACTACACTTGTATTTACGCATAGTTTTGAGCACATTTGTACTTTGTACTCATGTATTTACTAATATTTAATACTGTTATTTGGTTCATTCCAGAGGATCGACTACCTTTTACTGCttaactgttttcttttttttactgttgggTTGAGAATGGTCCATCACCCAAACATGGTAAATATGGGTAACAGGCAGACCAGTGATAACTGAACAACAGGCTACAGTATGATGTTTAACATCTTTCTAAACTGTAATGTAGGTCTGCCTCATATGTACAAAATGGGAGCATATAAAAATGtacgtatttaaaaaaatagaataaatattaaaaagtataatctggtgcaccttatgtatgaattttactagtcaggttgtaggaagcagtaaagctactctgctaaagcacagcattatacaggagtttcagtgaagttttccAACACCGAGACTGGAgtagcatcagcattagccgctaacagtgctaagcgctagctcttttaccatttAGAAATAAGTATTATAGGCcagtaacctgctgctaaccctggctagcactgctaaagcagcattagcattagccgctaaccgcactagctctttcattgttcagaggtgagtattatcagacttttgcctgtgtgtttaccgtgttaaataCAAGGGACGAAAAGCTAGcttatcaccctggcttaccgaaacactcagggttcctcagtgtagcgctgtcaggccgcattagtggaaatctgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23385 False 362 lncRNA 0.41 2 8183247 8183699
XM_022679854.1 True 2910 mRNA 0.45 19 8168839 8184837

Neighbor

gene id symbol gene type direction distance location
LOC111191961 NA coding upstream 30 8164745 ~ 8168809 (+)
hus1 hus1 coding upstream 9364 8149000 ~ 8159475 (+)
pigm pigm coding upstream 251315 7911245 ~ 7917524 (+)
LOC103029195 LOC108257934,LOC105939654,LOC108257933,LOC101066992 coding upstream 311622 7854370 ~ 7857217 (+)
LOC107196909 LOC108431011,LOC108257934,LOC108257933,LOC107739933 coding upstream 318985 7848074 ~ 7849854 (+)
nipal2 nipal2,LOC107731686,LOC107594621,LOC107705020 coding downstream 392150 8576987 ~ 8586423 (+)
fzd6 fzd6 coding downstream 473582 8658419 ~ 8673576 (+)
LOC103037430 NA coding downstream 490791 8675628 ~ 8720475 (+)
LOC103039953 NA coding downstream 518484 8703321 ~ 8711294 (+)
LOC111191756 NA coding downstream 548878 8733715 ~ 8738266 (+)
G17300 anks6 non-coding upstream 132365 8035772 ~ 8036474 (+)
G17285 NA non-coding upstream 160031 8001023 ~ 8008808 (+)
G17221 LOC108431065,LOC108261516,LOC108257915 non-coding upstream 296612 7859884 ~ 7872227 (+)
G17206 NA non-coding upstream 464814 7694318 ~ 7704025 (+)
G17204 NA non-coding upstream 476438 7632912 ~ 7692401 (+)
G17329 NA non-coding downstream 558 8185395 ~ 8186009 (+)
LOC111194819 NA non-coding downstream 442541 8627378 ~ 8630083 (+)
G17402 NA non-coding downstream 448242 8633079 ~ 8633564 (+)
G17403 NA non-coding downstream 451785 8636622 ~ 8636853 (+)
G17417 NA non-coding downstream 484153 8668990 ~ 8690034 (+)
LOC103032995 NA other upstream 739448 7422571 ~ 7429391 (+)
G16820 NA other upstream 1635971 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 1990955 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 3651530 4515997 ~ 4517309 (+)
nrgn NA other upstream 5997632 2150630 ~ 2171207 (+)
G17414 NA other downstream 490782 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 706407 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 715103 8899940 ~ 8904004 (+)
G17443 NA other downstream 731749 8916586 ~ 8950159 (+)
G17745 NA other downstream 2096387 10281224 ~ 10281976 (+)

Expression


Co-expression Network