G17433 (LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057)


Basic Information

Item Value
gene id G17433
gene name LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8771847 ~ 8773763 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23508
AGCTCAGTCAGTTCCAGAAAGTTCTTCTTCAGAGCTTCTTGATTGGTATTGATCTCCTTCAGCTCATTCTCCAACTTCTCAAAAGTTGCCTCAAGGTCAATCATGTCTCGTGGGAAGGGGACTTCTGGATTCTCTCCAGTGTCCACTGTGGGGATGTTGGCTTTCTTAATCTCCTTCTCCACAAACCGCAGCTTTCTGTCCATTTCCTCACAGCGCCTCACTTCATTGACAAACTTCCTCTGGAACACGTTCACATCAGGGTTCAGATCTCTGAACTGCACCATTCCCAGTTCCCCCAGTTCACTGACACAGCAGTATGCAGCTTCTGACTGCAGGAAAAGCTGCGCTAGGGTCATCTCCTCACTCCGGAATAGTTCTCCCAT

Function

NR:

description
PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23508 True 383 lncRNA 0.49 4 8771847 8773763

Neighbor

gene id symbol gene type direction distance location
LOC111191756 NA coding upstream 33581 8733715 ~ 8738266 (+)
LOC103037430 NA coding upstream 51372 8675628 ~ 8720475 (+)
LOC103039953 NA coding upstream 60553 8703321 ~ 8711294 (+)
fzd6 fzd6 coding upstream 98271 8658419 ~ 8673576 (+)
nipal2 nipal2,LOC107731686,LOC107594621,LOC107705020 coding upstream 185424 8576987 ~ 8586423 (+)
LOC103029568 ptrfb,LOC103029568,LOC108426559,LOC108256430,LOC107550021 coding downstream 8668 8782431 ~ 8811493 (+)
LOC103031465 NA coding downstream 60779 8834542 ~ 8842882 (+)
LOC103030220 rpgrip1,LOC107664673,LOC107742250,LOC107550023 coding downstream 70735 8844498 ~ 8868718 (+)
LOC103030535 NA coding downstream 105822 8879585 ~ 8889395 (+)
LOC111191975 NA coding downstream 126462 8900225 ~ 8902254 (+)
G17421 NA non-coding upstream 22213 8746869 ~ 8749634 (+)
LOC111194833 NA non-coding upstream 55050 8715728 ~ 8716797 (+)
G17417 NA non-coding upstream 81813 8668990 ~ 8690034 (+)
G17403 NA non-coding upstream 134994 8636622 ~ 8636853 (+)
G17402 NA non-coding upstream 138283 8633079 ~ 8633564 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding downstream 99169 8872932 ~ 8877126 (+)
LOC111194870 NA non-coding downstream 154929 8928692 ~ 8931760 (+)
LOC111194882 NA non-coding downstream 299731 9073494 ~ 9074499 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding downstream 308325 9082088 ~ 9084442 (+)
G17496 NA non-coding downstream 429626 9203389 ~ 9215506 (+)
G17414 NA other upstream 55060 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 587010 8168839 ~ 8184837 (+)
LOC103032995 NA other upstream 1342456 7422571 ~ 7429391 (+)
G16820 NA other upstream 2238979 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 2593963 6168760 ~ 6177884 (+)
LOC111191971 NA other downstream 117481 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 126177 8899940 ~ 8904004 (+)
G17443 NA other downstream 142823 8916586 ~ 8950159 (+)
G17745 NA other downstream 1507461 10281224 ~ 10281976 (+)
G17904 abr other downstream 2404145 11177908 ~ 11190080 (+)

Expression


Co-expression Network