LOC111191971


Basic Information

Item Value
gene id LOC111191971
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8891244 ~ 8899645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23552
cAGCTTCACCCAGTGACAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGATACCAGTGACACCACTTCACCCAGTGTCAACAGTGAATCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCATCCAGTGTCAACAGTGAGTCTTCATTTACAGAAGTGACGATCACTGAATCCACTGTTACCAGTGACACCA
>XM_022668253.1
ATGGACTGTTTTTCCTGGTTGGATCATGGGACATCTTATGCTGTTACTGGTTCTGTGCCACTGTGTCACTCCTACATCGCTTCACCCAGTGACAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGATACCAGTGACACCACTTCACCCAGTGTCAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCACCCAGTGACAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCATCCAGTGTCAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCACCCAGTGTCAACAGTGAATCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCATCCAGTGTCAACAGTGAGTCTTCATTTACAGAAGTGACGATCACTGAATCCACTGTTACCAGTGACACCAcAGCTTCACCCAGTGACAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCACCCAGTGTCAACAGTGAGTCTTCATTTACAGAAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCATCCAGTGTCAACAGTGAGTCTTCATTTACAGAAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCACCCAGTGTCAACAGTGAGTCTTTATTTACAGAAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACAGCTTCATCCAGTGTCAACAGTGAGTCTTCATTTACAGAAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCAcAGCTTCACCCAGTGACAACAGTGAGTCTTCATTTACAGAAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCAGTAAGTAG

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU23552 False 228 lncRNA 0.37 3 8895965 8898289
XM_022668253.1 True 996 mRNA 0.47 13 8891244 8899645

Neighbor

gene id symbol gene type direction distance location
LOC103030535 NA coding upstream 1849 8879585 ~ 8889395 (+)
LOC103030220 rpgrip1,LOC107664673,LOC107742250,LOC107550023 coding upstream 22526 8844498 ~ 8868718 (+)
LOC103031465 NA coding upstream 48362 8834542 ~ 8842882 (+)
LOC103029568 ptrfb,LOC103029568,LOC108426559,LOC108256430,LOC107550021 coding upstream 79751 8782431 ~ 8811493 (+)
LOC111191756 NA coding upstream 152978 8733715 ~ 8738266 (+)
LOC111191975 NA coding downstream 580 8900225 ~ 8902254 (+)
LOC111191981 NA coding downstream 4436 8904081 ~ 8921731 (+)
LOC103021367 NA coding downstream 33039 8932684 ~ 8974038 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding downstream 81359 8981004 ~ 9005830 (+)
bmp6 bmp6 coding downstream 109601 9009246 ~ 9068931 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding upstream 14118 8872932 ~ 8877126 (+)
G17433 LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 non-coding upstream 117481 8771847 ~ 8773763 (+)
G17421 NA non-coding upstream 141610 8746869 ~ 8749634 (+)
LOC111194833 NA non-coding upstream 174447 8715728 ~ 8716797 (+)
G17417 NA non-coding upstream 201210 8668990 ~ 8690034 (+)
LOC111194870 NA non-coding downstream 29047 8928692 ~ 8931760 (+)
LOC111194882 NA non-coding downstream 173849 9073494 ~ 9074499 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding downstream 182443 9082088 ~ 9084442 (+)
G17496 NA non-coding downstream 303744 9203389 ~ 9215506 (+)
G17632 NA non-coding downstream 582757 9482402 ~ 9482708 (+)
G17414 NA other upstream 174457 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 706407 8168839 ~ 8184837 (+)
LOC103032995 NA other upstream 1461853 7422571 ~ 7429391 (+)
G16820 NA other upstream 2358376 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 2713360 6168760 ~ 6177884 (+)
LOC111191978 NA other downstream 295 8899940 ~ 8904004 (+)
G17443 NA other downstream 16941 8916586 ~ 8950159 (+)
G17745 NA other downstream 1381579 10281224 ~ 10281976 (+)
G17904 abr other downstream 2278263 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 4067918 12967563 ~ 12975106 (+)

Expression


Co-expression Network