LOC111191978


Basic Information

Item Value
gene id LOC111191978
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8899940 ~ 8904004 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23560
cAGCTTCACCCAGTGTCAACAGTGAGTCTTCATTTACAGAAGTGACGATCACTGAATCCACTGTTACCAGTGACACCACTTCATCCAGTGTCAACAGTGAGTCTTCATTTACAGGAGTGATGAGCAGTGACTCCACTGTTACCAGTGACACCACTTCACCCAGTGTCAACAGTGACTCTTCATTTACAGGAGTGATAAGCAGTGACTCCACTGTAACCAGTGACACCAcTACATCCAGTGTTAACAGTG
>XM_022668275.1
ATGGTATGGCCTTCACCCATAGTCAACAGTGAGTCTTCATTTACAGAAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCACCCAGTGTCAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCATCCAGTGTCAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCACCCAGTGACAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCACTTCATCCAGTGTCAACAGTGAGTCTTCATTTACAGGAGTGATGAGCAGTGACTCCACTGTTACCAGTGACACCACTTCACCCAGTGTCAACAGTGACTCTTCATTTACAGGAGTGATAAGCAGTGACTCCACTGTAACCAGTGACACCAcTACATCCAGTGTTAACAGTGAGTCTTCATTTACAGGAGTGACGAGCAGTGAATCCACTGTTACCAGTGACACCAGTAAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23560 False 249 lncRNA 0.46 4 8899940 8903942
XM_022668275.1 True 543 mRNA 0.47 8 8902645 8904004

Neighbor

gene id symbol gene type direction distance location
LOC103030535 NA coding upstream 10545 8879585 ~ 8889395 (+)
LOC103030220 rpgrip1,LOC107664673,LOC107742250,LOC107550023 coding upstream 31222 8844498 ~ 8868718 (+)
LOC103031465 NA coding upstream 57058 8834542 ~ 8842882 (+)
LOC103029568 ptrfb,LOC103029568,LOC108426559,LOC108256430,LOC107550021 coding upstream 88447 8782431 ~ 8811493 (+)
LOC111191756 NA coding upstream 161674 8733715 ~ 8738266 (+)
LOC111191981 NA coding downstream 77 8904081 ~ 8921731 (+)
LOC103021367 NA coding downstream 28680 8932684 ~ 8974038 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding downstream 77000 8981004 ~ 9005830 (+)
bmp6 bmp6 coding downstream 105242 9009246 ~ 9068931 (+)
tfap2a tfap2a,LOC107664660,LOC107671378 coding downstream 215400 9119404 ~ 9132136 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding upstream 22814 8872932 ~ 8877126 (+)
G17433 LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 non-coding upstream 126177 8771847 ~ 8773763 (+)
G17421 NA non-coding upstream 150306 8746869 ~ 8749634 (+)
LOC111194833 NA non-coding upstream 183143 8715728 ~ 8716797 (+)
G17417 NA non-coding upstream 209906 8668990 ~ 8690034 (+)
LOC111194870 NA non-coding downstream 24688 8928692 ~ 8931760 (+)
LOC111194882 NA non-coding downstream 169490 9073494 ~ 9074499 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding downstream 178084 9082088 ~ 9084442 (+)
G17496 NA non-coding downstream 299385 9203389 ~ 9215506 (+)
G17632 NA non-coding downstream 578398 9482402 ~ 9482708 (+)
LOC111191971 NA other upstream 295 8891244 ~ 8899645 (+)
G17414 NA other upstream 183153 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 715103 8168839 ~ 8184837 (+)
LOC103032995 NA other upstream 1470549 7422571 ~ 7429391 (+)
G16820 NA other upstream 2367072 6532396 ~ 6532868 (+)
G17443 NA other downstream 12582 8916586 ~ 8950159 (+)
G17745 NA other downstream 1377220 10281224 ~ 10281976 (+)
G17904 abr other downstream 2273904 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 4063559 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 4140827 13044831 ~ 13074453 (+)

Expression


Co-expression Network