LOC111194882


Basic Information

Item Value
gene id LOC111194882
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9073494 ~ 9074499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23578
GCATTTAGAACTGAGAGGAAGATAAGTAAAtgtggttttaagttttaagtgagtgaaattATGGGAACACACTggctgcgtccgaaatcgcgtacttccatactaaacagtatgcaaaagcagtatGCGAGATCGGGTAGTGTGTCCGAATGCGCAGTAGGCGAGTTTGAGTACGCGAAAAGTTCCCGGATGACGTACTGCACCGGgagacatttttaagtatacaaGCCCAGCACACTTCACCCGCTAatatttcccacaatccaccGGGAGCCGCGCTGAGCTGAGTGACCCGTCAGTGAGCGGCGGAGCGGCGGaggagaggagtggagagagagagaagtttatGAGattcaaCTATCCTTCCTACTCgagaggatgaagatgaagagagggagaaaaatgaacaatgaataaaaaaa
>XR_002651329.1
gctgcgtccgaaatcgcgtacttccatactaaacagtatgcaaaagcagtatGCGAGATCGGGTAGTGTGTCCGAATGCGCAGTAGGCGAGTTTGAGTACGCGAAAAGTTCCCGGATGACGTACTGCACCGGgagacatttttaagtatacaaGCCCAGCACACTTCACCCGCTAatatttcccacaatccaccGGGAGCCGCGCTGAGCTGAGTGACCCGTCAGTGAGCGGCGGAGCGGCGGaggagaggagtggagagagagagaagtttatGAGattcaaCTATCCTTCCTACTCgagaggatgaagatgaagagagggagaaaaatgaacaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23578 True 422 lncRNA 0.33 2 9073494 9074499
XR_002651329.1 False 337 lncRNA 0.51 2 9073568 9074488

Neighbor

gene id symbol gene type direction distance location
bmp6 bmp6 coding upstream 4563 9009246 ~ 9068931 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding upstream 67664 8981004 ~ 9005830 (+)
LOC103021367 NA coding upstream 99456 8932684 ~ 8974038 (+)
LOC111191981 NA coding upstream 151763 8904081 ~ 8921731 (+)
LOC111191975 NA coding upstream 171240 8900225 ~ 8902254 (+)
tfap2a tfap2a,LOC107664660,LOC107671378 coding downstream 44905 9119404 ~ 9132136 (+)
LOC103030214 NA coding downstream 237291 9311790 ~ 9482091 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding downstream 746462 9820961 ~ 9836628 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding downstream 863262 9937761 ~ 9954129 (+)
LOC103024812 NA coding downstream 906107 9980606 ~ 9989518 (+)
LOC111194870 NA non-coding upstream 141734 8928692 ~ 8931760 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding upstream 196368 8872932 ~ 8877126 (+)
G17433 LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 non-coding upstream 299731 8771847 ~ 8773763 (+)
G17421 NA non-coding upstream 323860 8746869 ~ 8749634 (+)
LOC111194833 NA non-coding upstream 356697 8715728 ~ 8716797 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding downstream 7589 9082088 ~ 9084442 (+)
G17496 NA non-coding downstream 128890 9203389 ~ 9215506 (+)
G17632 NA non-coding downstream 407903 9482402 ~ 9482708 (+)
G17637 NA non-coding downstream 487929 9562428 ~ 9562725 (+)
G17643 NA non-coding downstream 512159 9586658 ~ 9586872 (+)
G17443 NA other upstream 123335 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 169490 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 173849 8891244 ~ 8899645 (+)
G17414 NA other upstream 356707 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 888657 8168839 ~ 8184837 (+)
G17745 NA other downstream 1206725 10281224 ~ 10281976 (+)
G17904 abr other downstream 2103409 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 3893064 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 3970332 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 4022211 13096710 ~ 13128508 (+)

Expression


Co-expression Network