G17474 (txndc5,LOC107730007,LOC107557239,LOC107678545)


Basic Information

Item Value
gene id G17474
gene name txndc5,LOC107730007,LOC107557239,LOC107678545
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9082088 ~ 9084442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23581
GTTGCCAGCAGTAAGCTCGTACATGCCATGCTTGGGCTCAGGCACTTTGGGGGGCTCGGGCTCACTTTCAGGCTCCTCAGGCTCCTCCTGTAGAGTTTTCAGCATCCAGGTCTCCAGTGACTGCAGGTCCCTTGAACCCTGATATTTCACTGCCTCCTGCTCAGGTTTAAACAGCTTCAGaGTAGGATATCCACGGATCCCATGGTCACTGGAGCAAAACTTGGTGTCCTTAGTGCAATCTACTTTTACAACATAGATGGGAGGAGTCTCCATACTGTTGTATTTGTCTGCCAGCTCATTCCATGTTCCCTGTAGCCTCTGGCAATGACCACACCTGTACAAGACAAAGCACAGAATACAATGTTAAAACCTCCTGGGGGCATGCGTTTTTATGctaaataaacaatgtttattgGAAGGGTTTTTATTTGAGACCTTATACTAGACTTTTAATGTACCTTTAGTAAATGCAATTAATTGTACCTAAGCTGTTTCACCTGTGCTTTAT

Function

symbol description
txndc5 Predicted to enable protein disulfide isomerase activity. Predicted to be involved in apoptotic cell clearance. Predicted to be located in endoplasmic reticulum lumen. Orthologous to human TXNDC5 (thioredoxin domain containing 5).

NR:

description
PREDICTED: thioredoxin domain-containing protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23581 True 508 lncRNA 0.45 3 9082088 9084442

Neighbor

gene id symbol gene type direction distance location
bmp6 bmp6 coding upstream 13157 9009246 ~ 9068931 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding upstream 76258 8981004 ~ 9005830 (+)
LOC103021367 NA coding upstream 108050 8932684 ~ 8974038 (+)
LOC111191981 NA coding upstream 160357 8904081 ~ 8921731 (+)
LOC111191975 NA coding upstream 179834 8900225 ~ 8902254 (+)
tfap2a tfap2a,LOC107664660,LOC107671378 coding downstream 34962 9119404 ~ 9132136 (+)
LOC103030214 NA coding downstream 227348 9311790 ~ 9482091 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding downstream 736519 9820961 ~ 9836628 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding downstream 853319 9937761 ~ 9954129 (+)
LOC103024812 NA coding downstream 896164 9980606 ~ 9989518 (+)
LOC111194882 NA non-coding upstream 7589 9073494 ~ 9074499 (+)
LOC111194870 NA non-coding upstream 150328 8928692 ~ 8931760 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding upstream 204962 8872932 ~ 8877126 (+)
G17433 LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 non-coding upstream 308325 8771847 ~ 8773763 (+)
G17421 NA non-coding upstream 332454 8746869 ~ 8749634 (+)
G17496 NA non-coding downstream 118947 9203389 ~ 9215506 (+)
G17632 NA non-coding downstream 397960 9482402 ~ 9482708 (+)
G17637 NA non-coding downstream 477986 9562428 ~ 9562725 (+)
G17643 NA non-coding downstream 502216 9586658 ~ 9586872 (+)
G17679 NA non-coding downstream 761572 9846014 ~ 9846301 (+)
G17443 NA other upstream 131929 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 178084 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 182443 8891244 ~ 8899645 (+)
G17414 NA other upstream 365301 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 897251 8168839 ~ 8184837 (+)
G17745 NA other downstream 1196782 10281224 ~ 10281976 (+)
G17904 abr other downstream 2093466 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 3883121 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 3960389 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 4012268 13096710 ~ 13128508 (+)

Expression


Co-expression Network