G17496


Basic Information

Item Value
gene id G17496
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9203389 ~ 9215506 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23608
tcacacaaagcaatccagactgttctcatacagagttccccaatggtggaacaaactaccttccactaccagatcaggagaatctctcactatctttaagaaactcctgaagctcttcaaagagcacttactctcctaacacctctaacaaactaactaattctaacctcatctccttcttcctcttctctactcctctatcccattatttccctctgacctccttaaggccctatctatagatgctttatttttaacttctattatttttgtacttaacctcttctattatttgcacttcaatattgtaagtcgctttggacaaaagcgtctgccaaatgtaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23608 True 346 lncRNA 0.38 2 9203389 9215506

Neighbor

gene id symbol gene type direction distance location
tfap2a tfap2a,LOC107664660,LOC107671378 coding upstream 71253 9119404 ~ 9132136 (+)
bmp6 bmp6 coding upstream 134458 9009246 ~ 9068931 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding upstream 197559 8981004 ~ 9005830 (+)
LOC103021367 NA coding upstream 229351 8932684 ~ 8974038 (+)
LOC111191981 NA coding upstream 281658 8904081 ~ 8921731 (+)
LOC103030214 NA coding downstream 96284 9311790 ~ 9482091 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding downstream 605455 9820961 ~ 9836628 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding downstream 722255 9937761 ~ 9954129 (+)
LOC103024812 NA coding downstream 765100 9980606 ~ 9989518 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding downstream 775900 9991406 ~ 9995040 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding upstream 118947 9082088 ~ 9084442 (+)
LOC111194882 NA non-coding upstream 128890 9073494 ~ 9074499 (+)
LOC111194870 NA non-coding upstream 271629 8928692 ~ 8931760 (+)
G17442 LOC108426561,LOC103358366,LOC104935909 non-coding upstream 326263 8872932 ~ 8877126 (+)
G17433 LOC102796188,LOC108256678,LOC101465343,LOC103355494,LOC100690057 non-coding upstream 429626 8771847 ~ 8773763 (+)
G17632 NA non-coding downstream 266896 9482402 ~ 9482708 (+)
G17637 NA non-coding downstream 346922 9562428 ~ 9562725 (+)
G17643 NA non-coding downstream 371152 9586658 ~ 9586872 (+)
G17679 NA non-coding downstream 630508 9846014 ~ 9846301 (+)
G17685 NA non-coding downstream 672360 9887866 ~ 9888378 (+)
G17443 NA other upstream 253230 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 299385 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 303744 8891244 ~ 8899645 (+)
G17414 NA other upstream 486602 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 1018552 8168839 ~ 8184837 (+)
G17745 NA other downstream 1065718 10281224 ~ 10281976 (+)
G17904 abr other downstream 1962402 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 3752057 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 3829325 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 3881204 13096710 ~ 13128508 (+)

Expression


Co-expression Network