G17558


Basic Information

Item Value
gene id G17558
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 8911970 ~ 8960840 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23705
TGGTGACATTGGTAAAGTTAAATCCACTGCTCTCCACTCCTTCAAATACAGTGTAGAGAGTGAAGGTGTATTTAGTTCCAGGAGAAAGAGATGAGATGTTTCTTGTTACTGTATCATTTTCGAAATCTGATCCATTGATGGTAATGTTCATTATATTGTAGATCAGTCTGTAACTGTAATTGTCAATGTTGTTCACTTTGTTCCATTCTAATATTAACTCAGTCTCAGTACGACTCTTTACCCATACATCGGTTACACTGGATGGAGctgaaatagagaaagagagagagagaggaaataaaataagatgGGGAGTGAAGgggaaaatgaataataaattgtGTTAAAGCACATAAGTTACATAAcaaggttaaataaataatggagAGTATGAATACTTACTGTTACTGTACTCAAG
>TU23708
TGGTGACATTGGTAAAGTTAAATCCACTGCTCTCCACTCCTTCAAATACAGTGTAGAGAGTGAAGGTGTATTTAGTTCCAGGAGAAAGAGATGAGACTGTGTAGTTCACTACAGATCCTCCCTCTGATCCATTGATGGTGATGTTTATTCCATTGTAGTTCAGTCTGTAACTGTAACTGCTGCTGTTGTTCACTTTGTTCCATTGTAATGTTAACCCAGTCTCAGTGCGACTCTTTACCCATACATCGGTTACACTGGATGgagctgaaagagaaagagagggagagagagagaga
>TU23709
GTGACACTGGCAAAGTTAAATCCACTGCTCTCCACTCCTTCAAATACAGTGTAGAGAGTGAAGGTGTATTTAGTTCCAGGAGAAAGAGATGAGACTGTGTAGTTCACTACAGATCCTCCCTCTGATCCATTGATGGTGATGTTTATTCCATTGTAGTTCAGTCTGTAACTGTAACTGCTGCTGTTGTTCACTTTGTTCCATTGTAATGTTAACCCAGTCTCAGTGCGACTTCTTACAAACGCACTGTATACTTTGGATggag
>TU23712
TGGTGACATTGGTAAAGTTAAATCCACTGCTCTCCACTCCTTCAAATACAGTGTAGAGAGTGAAGGTGTATTTAGTTCCAGGAGAAAGAGATGAGACTGTGTAGTTCACTACAGATCCTCCCTCTGATCCATTGATGGTGATGTTTATTCCATCATAGTTCAgtctgtaactgtaactgttgCTGTTGTTCACTTTGTCCCATTCCAGTATCAACTCAGTCTCAGTACGACTCTTTACCAATACATGGGTAACAGTGGATGGagctgagagagtgagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23705 True 418 lncRNA 0.38 2 8958680 8960840
TU23708 False 296 lncRNA 0.43 2 8947833 8960840
TU23709 False 262 lncRNA 0.58 2 8911970 8914203
TU23712 False 283 lncRNA 0.58 2 8957043 8960840

Neighbor

gene id symbol gene type direction distance location
LOC103030846 LOC108426561,LOC103358366,LOC104935909 coding downstream 34845 8873882 ~ 8877125 (-)
LOC103029888 LOC103029888,LOC108426543,LOC107664666,LOC107550022,LOC107742254,LOC100704658 coding downstream 80049 8813024 ~ 8831921 (-)
LOC103028623 LOC108426558,LOC108256678,LOC107655803,LOC107755711,LOC107557242,LOC105028465,LOC107550020,LOC107664669,LOC107742255 coding downstream 135723 8746885 ~ 8776247 (-)
LOC103037764 laptm4b,LOC103037764,LOC108414450,LOC106579220,LOC106605533 coding downstream 255096 8645276 ~ 8656874 (-)
matn2 NA coding downstream 267538 8630223 ~ 8644432 (-)
LOC103047134 LOC103047134 coding upstream 14618 8975458 ~ 8979618 (-)
txndc5 txndc5,LOC107730007 coding upstream 110542 9071382 ~ 9084286 (-)
bloc1s5 bloc1s5 coding upstream 148174 9109014 ~ 9113905 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding upstream 1110238 10071078 ~ 10078582 (-)
elovl2 elovl2,LOC101268971 coding upstream 1142339 10103179 ~ 10118608 (-)
G17536 NA non-coding downstream 100491 8793865 ~ 8811479 (-)
G17532 NA non-coding downstream 123683 8746380 ~ 8788287 (-)
G17514 NA non-coding downstream 238793 8668990 ~ 8673177 (-)
G17326 hus1 non-coding downstream 752585 8148967 ~ 8159385 (-)
G17313 NA non-coding downstream 855681 8056033 ~ 8056289 (-)
G17585 NA non-coding upstream 23521 8984361 ~ 8985654 (-)
G17589 NA non-coding upstream 37260 8998100 ~ 9442767 (-)
G17600 NA non-coding upstream 107195 9068035 ~ 9157978 (-)
G17599 NA non-coding upstream 143724 9104564 ~ 9108428 (-)
G17640 NA non-coding upstream 602211 9563051 ~ 9563268 (-)
LOC111188216 NA other downstream 25653 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 904350 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 2367695 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 2548965 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 2801687 6105816 ~ 6110283 (-)
G17638 NA other upstream 601587 9562427 ~ 9562725 (-)
mak mak other upstream 1034305 9995145 ~ 10009151 (-)
G17792 NA other upstream 1285835 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 2055189 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 2115398 11076238 ~ 11083799 (-)

Expression


Co-expression Network