G17599


Basic Information

Item Value
gene id G17599
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9104564 ~ 9108428 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23766
aaagaatttcatgattgcactatttcaaattattctaattcgttgaccagcacctgtatatatattagggtATAAAAACATTCTAGCAGTGCAGTAGATtttgctaatggtcattaaataattaacagcaaATTGCAAGGTGACTGATGtgccatataaatataaaaaaatgacagtagGGTGTGGAGAATGTGGACTTGTCACACCACAAGTATGTGAAATGGTGTCAGGATATATATTATTAGCAGCGTAACACAGACTAAAAAACATCAGCAATATGTTTAGCCCTGTTGGAGTTTAACATATTGGAACTGGAATTAATTGCTGATTTTCAAACCAGTTTACAATAATTGCTGTTACCAAATTCACAATCCACAACTAGGTTACCCTGTATTCTGCATATGCATTTACCTCCTAAAACAGGGACTTTTAATATGTTGCCTTAAGGCAGCATTATGCAGTTAGATCACAAGGCAATCATGCTAAAGCAGTGGTTCTTGATGTTTTTCAGGGATATGAAAACAGGAACCCACAAGATCCTAAAAAGTGGGCGTTTGTGGTTTATGCTTTGAGACTATGGAACAGTCTGCCACCCAATTTTCACCAAGCCACTTCAATCTtggtttttaaatcaggtctaaAAACGGACTTTTACAAACTGGCATTTAAATAGAAAGAGACTGTGGTAATAGTagatgttttattcagtttattgtgtttatttgttttattattcatgaatagttttatttgattttccaTGTTTAGCACATTGGTCAGTGCAAGTTGTTAAAAAGAGTGCTTCATCAACACATCTTGCTTACGTGTAAAGTTGGTTGTGTGAAATTTGGTGTGAAATAACAACCTTTACCAGTCATAATATAAAACCCAAGTCCAAAGCCAATGGCGAAATGATTATTTCTTCATCCTTCAGAGGGAGGCTCTAATTATATGGTGCAATGCCTTTTCTGTCTGGTATGAAAACTATCGTAAAACCATCAGCTTAAGACTTACCGGCTTTAACATTCCACATCAGACAAGTAAACTCTGAGAAACTGCACCTGTAGTGAAGCCTTTtgcttaatattaaaatgttttagaacCAACAAGGAGGCTTTCATCTTCTACCGTTTACTCTCAAAGCGTGCTAGGCTGCACATCGTCCATGGAAAGGTCAAAAATGAAGTCACTGGATGAACTAATCCTGAGTGCGTGATTACCACCCTTTCACCTATATTTCAGACCGTCCAATGTTAACTCCAAGTCAGGAAATTTTCTAAGCAAACGTGGCGGGAAGTTTGCTTTTACTCACCATGGTCTTGAATGTCATGATAAAATAAGGCTTTTGTGGTTTatttgaacagttttttttttctgtgtcagGATGAGTGTACAACCTATAAAAAAGTTGCACCCATAAGGAATTAACTGACAGGAATGGAACTGGGTGGGTGGGTTTGACATCATGAGACATGCTTCTCATTGCACATGATTTCCATTCTTACTCTTGCTGTTGTGTTGGTAGCATCCTTTGCCAGTGAAGTATCAGTCATGACTACAGACATTTAGAGAGCCGCCATGCTCTCCATGAGTCATCCTGTTTCATCCttccagcaccattggcagacggctgcatGACACGGGACTAAATGCATGCAAATCATTACAACTTCCTTAACACCATGTGAGCATCGCCAAAGACTGCAGTGATTTCGGAGTGACTCAGAATGACAGCAAGTAATCCTCAGTAAAAAGTGTTGCTTTTGTCTTGCTCAAGAAACCATAAGATCTGTTTTCCCTCCACAGGTTGTGCAAGACTTCCTGCAACCATTCATCAGAGGTCAATTACCAACCTCAGGCTGTTGGCTGATTATATTTGATTGGTGGACTATGTTTAATTTAGCAGTGACCTTCTGCCAGGTTTCAAAAGATACAGAACACCTGCCAGGCATGCTGAGAGATACAGTACCTCTCTTGGAAGGACTTTCCTGGGATCAAGTTGTAATGAAGCAAACCCAACAGAGGGGTCAGCCTGCGTGCAGCAGTGACTGGGTTTCTGAAGTGGTTCCCAACAGAGGCTGCATCACTTCTGCTCGCTGACCCTGGAGGGAGGCTCCTTCGGATGTAGTGTTTGGTTCAGGAAACGGTGCTTTGCGCCACTATTTCCTGTCTGTGCCTCTCAAGACTGACCGTCCAGCAAGATGGGAGCAGAGTGTGCCTGTTGCCGGGGAATTTTATCAGACCAGGGCCTGCCTCGCCAGCGCTCCAGGAACCCAAGCTTGtctgagtttttttcttttctggccTCCTCTCTATCAGTGTTGCAGAGGTCTTCCTGTTTTGGAGGGAGTGCAGTGATCCAGGTCAGAAGCCGGACTAGCCTGCCAACATAAATCGTGAAGGAGAAATGCAGTAAGAGCTGATCTGACAGAGGAATGCACGGAGATCAGACGTCCAATCTACATCCCTGCTTGCTCCACCTTCCTCCGAACAAAGGAACATCCATCCACAGCACTCCAAAGGAGAACAGCATGTCACAGCATTTTTAAGCACACTGTATCCATGTACAGACCACAAATTGTCTTAAATGAAAGATTTAATGAGGAATGTCCAATCTAGGTATGATAGATATCAGGTTGACTGGCAGGCAATGTTCCCCTAATGAGTTCAGAATTAAACGTTATTGGCCAAGTATTCTTGTACATTTATACTGTACAAGGTATTTGTCTGTTGCACACCTACAATTACATGCCCACTTAAAGCTCTTGGGATTGCACTATTCAAATAAATCACCATCTAGACAACTTTGACACCCAGACCTGcataagttgtaaggtgttatcttgtgagtgactGTTTGGACAGTTTGCAGGAGGCTTGCTAGCAGGTGCCAGACTGATGAGacattcatttttgtttgtgcatTTAATATTCCTCTATCCTTAatgtcacatgtgtaccaagaatacgtcatagaaggcattaccacccacagtggacagtgcagtgtgtggtaatgattgtgaccagtgaCATCTAGGTAGAACTGTCCgtgtaaaaagaaaattggCTGGCAAAAATCACACATACATATCCCGCAGGTCATTGCAGTATTCTTTAATCTCTGTGGGACATGGCAAGCATTATGAGATATGGTACATCTCATGCCCCCGTTAGCCTCTCTGTGCCAGCACTTGGATTGTATTGGAATGTCCAAGACATAGTACAATGGGAAAGtcctagagtttagattctttGCCCAAGCCCGACCCAATGCCTGAACCGAACTTGGGCTGGGTTGAGCTGAGATCTTCCTTCACTTTTCTCCGGCcaggttgggtcgggctcaagaaaatggtctgtgatgtaggcatctgttttttaatgatatttttattttatataaagctgtggcatgattatcacaatatagcaaagtaataaAGTTAGAATGTTAAAATTACGCAGCTCTGGGCGCACATATTAGCTCCTCCACTAGTCCGCATTACACATCTGACTTTAAGCACTGTGAGTagatgttcttaataaacatttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23766 True 3560 lncRNA 0.41 2 9104564 9108428

Neighbor

gene id symbol gene type direction distance location
txndc5 txndc5,LOC107730007 coding downstream 20278 9071382 ~ 9084286 (-)
LOC103047134 LOC103047134 coding downstream 124946 8975458 ~ 8979618 (-)
LOC103030846 LOC108426561,LOC103358366,LOC104935909 coding downstream 227439 8873882 ~ 8877125 (-)
LOC103029888 LOC103029888,LOC108426543,LOC107664666,LOC107550022,LOC107742254,LOC100704658 coding downstream 272643 8813024 ~ 8831921 (-)
LOC103028623 LOC108426558,LOC108256678,LOC107655803,LOC107755711,LOC107557242,LOC105028465,LOC107550020,LOC107664669,LOC107742255 coding downstream 328317 8746885 ~ 8776247 (-)
bloc1s5 bloc1s5 coding upstream 586 9109014 ~ 9113905 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding upstream 962650 10071078 ~ 10078582 (-)
elovl2 elovl2,LOC101268971 coding upstream 994751 10103179 ~ 10118608 (-)
mppe1 mppe1 coding upstream 1123085 10231513 ~ 10257873 (-)
LOC103028097 tnip3 coding upstream 1159230 10267658 ~ 10278333 (-)
G17585 NA non-coding downstream 118910 8984361 ~ 8985654 (-)
G17558 NA non-coding downstream 143724 8911970 ~ 8960840 (-)
G17536 NA non-coding downstream 293085 8793865 ~ 8811479 (-)
G17532 NA non-coding downstream 316277 8746380 ~ 8788287 (-)
G17514 NA non-coding downstream 431387 8668990 ~ 8673177 (-)
G17640 NA non-coding upstream 454623 9563051 ~ 9563268 (-)
G17646 NA non-coding upstream 494359 9602787 ~ 9603419 (-)
G17648 NA non-coding upstream 496488 9604916 ~ 9605232 (-)
G17661 NA non-coding upstream 705283 9813711 ~ 9814683 (-)
G17663 LOC107746320 non-coding upstream 706501 9814929 ~ 9818329 (-)
LOC111188216 NA other downstream 218247 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 1096944 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 2560289 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 2741559 6354945 ~ 6363005 (-)
LOC103024654 NA other downstream 2994281 6105816 ~ 6110283 (-)
G17638 NA other upstream 453999 9562427 ~ 9562725 (-)
mak mak other upstream 886717 9995145 ~ 10009151 (-)
G17792 NA other upstream 1138247 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 1907601 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 1967810 11076238 ~ 11083799 (-)

Expression


Co-expression Network