G17640


Basic Information

Item Value
gene id G17640
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9563051 ~ 9563268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23807
tacctcatgtctcatttgtagctccaccccttccccaggtgtttccactcccagtgtgtttcctgtttagttaaatagctttcctctgtcacctgtcctggtcggtctttgcactgtcccccgttgtctgtccctctgcgtttctctgttttcagtgttttcatagccttagcccgagtcccttgttctttgtttgtaatatatatttatcttcctgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23807 True 218 lncRNA 0.46 1 9563051 9563268

Neighbor

gene id symbol gene type direction distance location
bloc1s5 bloc1s5 coding downstream 449146 9109014 ~ 9113905 (-)
txndc5 txndc5,LOC107730007 coding downstream 478765 9071382 ~ 9084286 (-)
LOC103047134 LOC103047134 coding downstream 583433 8975458 ~ 8979618 (-)
LOC103030846 LOC108426561,LOC103358366,LOC104935909 coding downstream 685926 8873882 ~ 8877125 (-)
LOC103029888 LOC103029888,LOC108426543,LOC107664666,LOC107550022,LOC107742254,LOC100704658 coding downstream 731130 8813024 ~ 8831921 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding upstream 507810 10071078 ~ 10078582 (-)
elovl2 elovl2,LOC101268971 coding upstream 539911 10103179 ~ 10118608 (-)
mppe1 mppe1 coding upstream 668245 10231513 ~ 10257873 (-)
LOC103028097 tnip3 coding upstream 704390 10267658 ~ 10278333 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding upstream 765822 10329090 ~ 10340189 (-)
G17589 NA non-coding downstream 120284 8998100 ~ 9442767 (-)
G17600 NA non-coding downstream 405073 9068035 ~ 9157978 (-)
G17599 NA non-coding downstream 454623 9104564 ~ 9108428 (-)
G17585 NA non-coding downstream 577397 8984361 ~ 8985654 (-)
G17558 NA non-coding downstream 602211 8911970 ~ 8960840 (-)
G17646 NA non-coding upstream 39519 9602787 ~ 9603419 (-)
G17648 NA non-coding upstream 41648 9604916 ~ 9605232 (-)
G17661 NA non-coding upstream 250443 9813711 ~ 9814683 (-)
G17663 LOC107746320 non-coding upstream 251661 9814929 ~ 9818329 (-)
G17681 NA non-coding upstream 283956 9847224 ~ 9847460 (-)
G17638 NA other downstream 326 9562427 ~ 9562725 (-)
LOC111188216 NA other downstream 676734 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 1555431 7924929 ~ 8007620 (-)
sec61b sec61b,LOC102796100 other downstream 3018776 6534859 ~ 6544275 (-)
LOC111191940 NA other downstream 3200046 6354945 ~ 6363005 (-)
mak mak other upstream 431877 9995145 ~ 10009151 (-)
G17792 NA other upstream 683407 10246675 ~ 10247318 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 1452761 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 1512970 11076238 ~ 11083799 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other upstream 1522212 11085480 ~ 11334518 (-)

Expression


Co-expression Network