G17679


Basic Information

Item Value
gene id G17679
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 9846014 ~ 9846301 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23850
aattctgtgcggatataaaaatttgacaatataagcagaggttacactagctgctgcatttaaataatggaggtagaattacagtatattagaaaaaaacgtgattgaaagttgtctgttttgccattgaaacctatggggatgggtggagttacacagctttctgcagccgaacagcagggggcgcccgacctgtggtggcttcacttttaagagacgatgctctgtccagctatatacagtctatggtctgtataaaccatacactgtaaagttaagtttcagttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23850 True 288 lncRNA 0.41 1 9846014 9846301

Neighbor

gene id symbol gene type direction distance location
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 9386 9820961 ~ 9836628 (+)
LOC103030214 NA coding upstream 363923 9311790 ~ 9482091 (+)
tfap2a tfap2a,LOC107664660,LOC107671378 coding upstream 713878 9119404 ~ 9132136 (+)
bmp6 bmp6 coding upstream 777083 9009246 ~ 9068931 (+)
LOC103046631 zgc:101569,LOC107678482,LOC107730011,LOC107557244 coding upstream 840184 8981004 ~ 9005830 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding downstream 91460 9937761 ~ 9954129 (+)
LOC103024812 NA coding downstream 134305 9980606 ~ 9989518 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding downstream 145105 9991406 ~ 9995040 (+)
sycp2l NA coding downstream 234290 10080591 ~ 10101407 (+)
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding downstream 297783 10144084 ~ 10227332 (+)
G17643 NA non-coding upstream 259142 9586658 ~ 9586872 (+)
G17637 NA non-coding upstream 283289 9562428 ~ 9562725 (+)
G17632 NA non-coding upstream 363306 9482402 ~ 9482708 (+)
G17496 NA non-coding upstream 630508 9203389 ~ 9215506 (+)
G17474 txndc5,LOC107730007,LOC107557239,LOC107678545 non-coding upstream 761572 9082088 ~ 9084442 (+)
G17685 NA non-coding downstream 41565 9887866 ~ 9888378 (+)
G17709 NA non-coding downstream 161489 10007790 ~ 10008795 (+)
G17735 NA non-coding downstream 400283 10246584 ~ 10247321 (+)
G17739 NA non-coding downstream 412717 10259018 ~ 10259526 (+)
G17742 NA non-coding downstream 423220 10269521 ~ 10270290 (+)
G17443 NA other upstream 895855 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 942010 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 946369 8891244 ~ 8899645 (+)
G17414 NA other upstream 1129227 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 1661177 8168839 ~ 8184837 (+)
G17745 NA other downstream 434923 10281224 ~ 10281976 (+)
G17904 abr other downstream 1331607 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 3121262 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 3198530 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 3250409 13096710 ~ 13128508 (+)

Expression


Co-expression Network