G17742


Basic Information

Item Value
gene id G17742
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10269521 ~ 10270290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23929
GGATCTGAAATGTATCTTGTTAATATGAAATGTGAATGTCTTCGTGTTTGGTATCATTTTAATGGTCTCAGTGTGAGAAGTACAATGGTCTCAGTGAAGAAATGTTAAAGATAACCTTAATAGAACATCTCTgaactttgggagaaatgtctccaTTCTGAAGAGACACTCCCCTTCCTGCTCCTGATGGGTTTAGGATTGCCCCGTGATGATCAAAGGCCATGATGAACAAATGGTCGTGATAGTCGGTAAATAGTGCCAAATTGTGTATTGTTCTGGTTGGATATTTAAGGAAAGCACAAAGACCTACTCTCCGAGTTTGTCTGGTAGTATGAGACCTCCCATGCTCTGCATGTAACCACCACTTCAAATATACCATACAACATTGTATTTCAAATGTACTGTGCACTATTCTTAACTGTTATCTTTAGATCTGTCTTTAGATTACTTTAggaatattgttatattattacatatgtCAATTAAGGTCACAATAAACCATTAACTGTTAATCTGTAGTAATTACTTTGTTGAGTCTTTTTCCTAGTAGGCCTAGGAGCCAAAGAGGTCTGTAGTCTGAGATTCTTTAAGTTTCTAGACTTTCATAGTTATATAGTGAGTTTCACTGGGTGCTATACCAAGCTCTTAACCGCTGAGGGGAACAAGAAGTTATGTGTGTTATGTTCTGTAATTATTCATTTAGATTAAGTTGAACCGCTGAACATCTCAACCTAGGTACCAGGCTGTT

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007420 brain development biological_process

KEGG:

id description
ko04330 Notch signaling pathway
ko05224 Breast cancer
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU23929 True 748 lncRNA 0.45 2 10269521 10270290

Neighbor

gene id symbol gene type direction distance location
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding upstream 42189 10144084 ~ 10227332 (+)
sycp2l NA coding upstream 168114 10080591 ~ 10101407 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 274481 9991406 ~ 9995040 (+)
LOC103024812 NA coding upstream 280003 9980606 ~ 9989518 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding upstream 315392 9937761 ~ 9954129 (+)
LOC103028717 impa1,LOC103028717,LOC107085441,LOC100708678,LOC102192612,LOC102777947,LOC101479609,LOC103356684,LOC108415234 coding downstream 70204 10340494 ~ 10350048 (+)
LOC103044085 LOC105902693,LOC107570661 coding downstream 247131 10517421 ~ 10805698 (+)
c3h11orf54 cunh11orf54,c28h11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214,LOC107685814 coding downstream 1118634 11388924 ~ 11394347 (+)
spata22 NA coding downstream 1126597 11396887 ~ 11401496 (+)
LOC111194924 NA coding downstream 1337900 11608190 ~ 11619687 (+)
G17739 NA non-coding upstream 9995 10259018 ~ 10259526 (+)
G17735 NA non-coding upstream 22200 10246584 ~ 10247321 (+)
G17709 NA non-coding upstream 260726 10007790 ~ 10008795 (+)
G17685 NA non-coding upstream 381143 9887866 ~ 9888378 (+)
G17679 NA non-coding upstream 423220 9846014 ~ 9846301 (+)
G17751 NA non-coding downstream 39775 10310065 ~ 10330395 (+)
G17812 NA non-coding downstream 112407 10382697 ~ 10382969 (+)
G17821 NA non-coding downstream 142629 10412919 ~ 10413158 (+)
G17828 NA non-coding downstream 160610 10430900 ~ 10431296 (+)
G17832 NA non-coding downstream 189492 10459782 ~ 10460123 (+)
G17443 NA other upstream 1319362 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 1365517 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 1369876 8891244 ~ 8899645 (+)
G17414 NA other upstream 1552734 8675619 ~ 8716787 (+)
LOC103041197 NA other upstream 2084684 8168839 ~ 8184837 (+)
G17745 NA other downstream 10934 10281224 ~ 10281976 (+)
G17904 abr other downstream 907618 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 2697273 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 2774541 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 2826420 13096710 ~ 13128508 (+)

Expression


Co-expression Network