G17751


Basic Information

Item Value
gene id G17751
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10310065 ~ 10330395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23942
GTGACTGCAAAGTTAAGAGAAGCCCTGATCCAGAAAGAGCGGACTGTGTTGTTCTCACAGTCTCCCCAGCCAGGACAATCTGTAGTGAAGGTTTCTTTGCTGTCGATTTTGCTGCACCAAGTCAGTTCATCAAACAAGAACCCGAGCAGTGTGTCCTCCACAGTGAACAGACATTCCCTTTTGTCCGTGAATGCATGCACCATATCCTTAGTTCTGCTCCAAAACAACATCCTACTACAAGCCACATGCTGTGTAATGGATTTTATTAGAGGGTCATATGCCTCAGGAGGAACGTCACATGGATCTTTCCCAACGTAGGCCTGATGAAATGTGTCCCAGATTCTTTCACAGTTGTTCACGCTCGATATATCGCTATGCTCTTTCAGATAAGTCTCACATCTCCCGACCACGGTGCTCTTTAACTCTTCCTCCGGGTTTTTAGCGGCTTCCAGGGTCAGCCCCAGAACCACGGCGAGCAAGGTGACGGTCAGCAGCACCACCGCGACCCCCAGCAGCAGGCAGCGCTTCCTCCGCCTGCGCTCAATGCCCGGCGAGGCGTCCTCATAAGACATGGCAGCTCCTGGAGTACCGGGGCTCGGGGTTCTTCTGACCGCGGTGGTGAGTGCAGCCTCTCCGGCTGCCAAGTGTCACCAGAGCCGCAGATTTAAAATAGAGCCGCGGGGCGTAACTCAGCCCGAGGAGGGGAGGAGGGTAAACACACAGTTAACCTGCGGCCGCTAGATTCACACTGAGCTGCTAACCACTGCCCTGAAACTGGTGTGAAACTGACTTAAAGAGAaacgagGACCAGCGGAATCCTCTGCTCTCTAGGACATTTATGAGATCCAGGATGGAGCCTTTTGAGCAGGATTCTCTAGAAATACAAAGAAGAAAACATGAAGAAACCCCAGGGGTTGGAACTGTTTTTCCTAGGAAAACTTTTGTAATTCTAGCTCTTGACACTTGGGATTTTAAAGGGCCCAAGCTTGTTTTGAAATTGTGTGAtatgtacagttttaaaaatatactgtttCCTTACTACTTACAGTGCAAACCAAGCTACATGTAATGTCATGAAATCCAG

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU23942 True 1084 lncRNA 0.49 6 10310065 10330395

Neighbor

gene id symbol gene type direction distance location
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding upstream 82733 10144084 ~ 10227332 (+)
sycp2l NA coding upstream 208658 10080591 ~ 10101407 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 315025 9991406 ~ 9995040 (+)
LOC103024812 NA coding upstream 320547 9980606 ~ 9989518 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010,LOC107678551 coding upstream 355936 9937761 ~ 9954129 (+)
LOC103028717 impa1,LOC103028717,LOC107085441,LOC100708678,LOC102192612,LOC102777947,LOC101479609,LOC103356684,LOC108415234 coding downstream 10099 10340494 ~ 10350048 (+)
LOC103044085 LOC105902693,LOC107570661 coding downstream 187026 10517421 ~ 10805698 (+)
c3h11orf54 cunh11orf54,c28h11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214,LOC107685814 coding downstream 1058529 11388924 ~ 11394347 (+)
spata22 NA coding downstream 1066492 11396887 ~ 11401496 (+)
LOC111194924 NA coding downstream 1277795 11608190 ~ 11619687 (+)
G17742 NA non-coding upstream 39775 10269521 ~ 10270290 (+)
G17739 NA non-coding upstream 50539 10259018 ~ 10259526 (+)
G17735 NA non-coding upstream 62744 10246584 ~ 10247321 (+)
G17709 NA non-coding upstream 301270 10007790 ~ 10008795 (+)
G17685 NA non-coding upstream 421687 9887866 ~ 9888378 (+)
G17812 NA non-coding downstream 52302 10382697 ~ 10382969 (+)
G17821 NA non-coding downstream 82524 10412919 ~ 10413158 (+)
G17828 NA non-coding downstream 100505 10430900 ~ 10431296 (+)
G17832 NA non-coding downstream 129387 10459782 ~ 10460123 (+)
G17838 NA non-coding downstream 209873 10540268 ~ 10545131 (+)
G17745 NA other upstream 28089 10281224 ~ 10281976 (+)
G17443 NA other upstream 1359906 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 1406061 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 1410420 8891244 ~ 8899645 (+)
G17414 NA other upstream 1593278 8675619 ~ 8716787 (+)
G17904 abr other downstream 847513 11177908 ~ 11190080 (+)
G18332 LOC107710578 other downstream 2637168 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 2714436 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 2766315 13096710 ~ 13128508 (+)
G18413 LOC103047348,LOC108437052,LOC108260116 other downstream 2884253 13214648 ~ 13224093 (+)

Expression


Co-expression Network