G17799


Basic Information

Item Value
gene id G17799
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10293586 ~ 10298657 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU24010
attacatttactaTATACAActtgaccttttttttattaggaagttaaattaattcatttgaattatttttttaattcctttaaataaatcaaaagccACAGCCATACATTAATTATCAATAAATTCTATGAAAATGAACGCGGGttatttttgacccatgttgtggAGTGGTAGTGATGATAAAAAGGGTTTACATTCAAAAAGTCCCTGAACCGGCGGCGGTTTTTCCAACCAATGAGAATGCAGAAACAAGCGGCATTAAGAATTTAATTGGTTAAATCCTGTTGCCACTTCTGATTGGCTGGGGCCTTTTGGCAGCTTTGTTGCAGTGAAAATCTCCGCGTTCGAGCAGGGACCGCTCCGCGAGCACACGCGCGCTCTCTCAAAACATTAAGAACAGACAGATATAGACGAGGATGATTTATCTGAGAGCTCGCGCGCAGTTTCGTACAGGAGGAGAGTTaatgtgagagagagcatgGTCCACATGTGAAAGTCCTTCATTCCAGGACCTAAAAAGCACGTTGAATCCTAACATTGCGTACAACTGCAGACAAGTTCCTTATAACAGAGTTGAAGGCTGCATTTCTGATCCAGAGATTCCATGTGTTGACTGCCTATGAGAGTCCACTCAGCATTTGATGAAGACTCAGGACCCCCAGGCCAGTCTCAAGTGTCACAGAAGAAGAtcatctgtaaataaaaagacacTCTACATCAAACAGACCTTTACTAGAGAAAACTTTAAATCAGGGCAATGTGGTCAGCAGCAGAAGGGCATGACTAAGTTCAGACTATTGGGCTATAGTCACAAATGAGGGATAAAAACATACTCACTTTCAGAATACTATATATGGACACACAAataacttttactcaaacaacTTAAATGTTGTGCTTTATATGGACAAATGTATTGACACATCTCTTAAACATtgaatttagttttatttagtccCATTTAAGtcacatatatataaactaagAAACTTAGCTATGCAGTctgcctttaaaaaaagcaaatgtgtAGCCAGTttaaaacagaatatttttttccttttttttaatcagcccTCATTTTGGATTTAGTTAGCCCTGCTGACTGCAGTTGTGCCCCTGAACACTAGCGCAACAATCATGCAAGAGAATATCTGCACTGACTTTACTTACAGTAAATGTGACTGTCGTTTGTTTGTATCTTGTGTTAATTCTGAAAGTACTGTAAAAGCAACATAATATAGTCTTAAATTGCAAAATTAGTCGTTTTTATATAGTACAATTATAAAGTCTGAGCCAGCttctttttaaaacgttataaaAATTTTGTAtaacctattattattattactacagaaaaatgcattttaaaacgGACATATATTAAgacaattatataaaacaatatagaaACCTAGAAACCTTCACTGCCAAtcagaacaaaaataaatgcatagAGTTGAAAGAATAGAGCAATAAAGTACAtaaaatgtttctgtttttttacaatttgcCATTATTTGGGCagtcattttaattatatttgtattcTTTTATAATACATTAGTTATTTTTGTAACAAtgaaataataatcattttacaGGTGAGAATGACATCATTGGTTTAGTAACAGAGATAATGGTGAATATATACACTGTGTTTGTTATTGTGGGCATTTGTGTCTTTTAAAGGCGTCTAATGTGACAGTAGATCTGACTAAAAAACCTTGTAAAGCCTTCAACTGTGAAAGAGCACTGcactgaaatcaatattttgtggaataaccctgattttaaacCACAGTTTTCCTCTtgacatgttcttctccaccagtcttacacactgcatttGGAAGGCTTTgtctctcctggtgcaaaaattcaagcagttcagattggtttgatggcttgtgatcatcaatctttctcttgattatattccagaggttttcaatttggtaaaataaaattaaaattcatcatttttaagtggtctcttatttttttcccagagctgtatgttgttgtttttttctttggattTTGGCCAGAATGTTCTTTTATTGTAATCCCAGGTAATTGAATATATGCTAATATGCTGAGAagtttgtttttatgtctttgtttGAAATGTTGtttgaataatatttttttaacatgctgtgtgttgagtttaacctgtaaataaagaatattttcc

Function

GO:

id name namespace
GO:0016997 alpha-sialidase activity molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko00511 Other glycan degradation
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU24010 True 2198 lncRNA 0.45 3 10293586 10298657

Neighbor

gene id symbol gene type direction distance location
LOC103028097 tnip3 coding downstream 15253 10267658 ~ 10278333 (-)
mppe1 mppe1 coding downstream 35713 10231513 ~ 10257873 (-)
elovl2 elovl2,LOC101268971 coding downstream 174978 10103179 ~ 10118608 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding downstream 215004 10071078 ~ 10078582 (-)
bloc1s5 bloc1s5 coding downstream 1179681 9109014 ~ 9113905 (-)
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding upstream 30433 10329090 ~ 10340189 (-)
LOC103044364 LOC108412379 coding upstream 586196 10884853 ~ 10952099 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding upstream 1048998 11347655 ~ 11370382 (-)
LOC103046022 NA coding upstream 1082345 11381002 ~ 11387605 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 1102859 11401516 ~ 11566079 (-)
G17796 NA non-coding downstream 22962 10269491 ~ 10270624 (-)
G17791 NA non-coding downstream 33299 10259935 ~ 10260287 (-)
G17782 NA non-coding downstream 159848 10133289 ~ 10133738 (-)
G17780 NA non-coding downstream 195861 10093193 ~ 10097725 (-)
G17770 NA non-coding downstream 262605 10017813 ~ 10030981 (-)
G17808 NA non-coding upstream 44139 10342796 ~ 10343263 (-)
G17845 NA non-coding upstream 241821 10540478 ~ 10543607 (-)
G17859 NA non-coding upstream 555969 10854626 ~ 10855071 (-)
G17921 NA non-coding upstream 751599 11050256 ~ 11060895 (-)
G17929 NA non-coding upstream 847748 11146405 ~ 11147408 (-)
G17792 NA other downstream 46268 10246675 ~ 10247318 (-)
mak mak other downstream 284435 9995145 ~ 10009151 (-)
G17638 NA other downstream 730861 9562427 ~ 9562725 (-)
LOC111188216 NA other downstream 1407269 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 2285966 7924929 ~ 8007620 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 717372 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 777581 11076238 ~ 11083799 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other upstream 786823 11085480 ~ 11334518 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 1136779 11435436 ~ 11595523 (-)
G18037 NA other upstream 1386330 11684987 ~ 11685391 (-)

Expression


Co-expression Network