G17859


Basic Information

Item Value
gene id G17859
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 10854626 ~ 10855071 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU24103
ccgtgatttgggcagccgtggttttatgttttttggatacaatccgggttagcacctgaacatccctttcagacagcttcctcttgcgtccacagttaatcctgttggatgtggttcatccttttTGGtcgtatgctgacattaccctggataccgtggctcttgatacatcacaaagacttgctgtcttggtcacagatgcgccaacaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccacaatgttgtgtgcattgcaatattttgagcaaaactgtgctctcaccctgctaactgaaccttcacactctgctcttactggtgcaataatgtgcaattaatgaagattggccaccaggctgcttcaatttagccatgaaacctcccacactaaaatgacaggtgtttcagtttcattgtccaacccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24103 True 446 lncRNA 0.45 1 10854626 10855071

Neighbor

gene id symbol gene type direction distance location
LOC103029242 LOC103029242,LOC108414971,LOC108256685 coding downstream 514437 10329090 ~ 10340189 (-)
LOC103028097 tnip3 coding downstream 576293 10267658 ~ 10278333 (-)
mppe1 mppe1 coding downstream 596753 10231513 ~ 10257873 (-)
elovl2 elovl2,LOC101268971 coding downstream 736018 10103179 ~ 10118608 (-)
gcm2 gcm2,LOC107552658,LOC107664656,LOC107707735,LOC107654664 coding downstream 776044 10071078 ~ 10078582 (-)
LOC103044364 LOC108412379 coding upstream 29782 10884853 ~ 10952099 (-)
aspa aspa,LOC107665049,LOC107712162,LOC107595485,LOC107731059 coding upstream 492584 11347655 ~ 11370382 (-)
LOC103046022 NA coding upstream 525931 11381002 ~ 11387605 (-)
LOC103045102 LOC103045102,LOC108427286,LOC106567973,LOC102213336,LOC101488131,LOC106603516 coding upstream 546445 11401516 ~ 11566079 (-)
akap10 akap10 coding upstream 712893 11567964 ~ 11588327 (-)
G17845 NA non-coding downstream 311019 10540478 ~ 10543607 (-)
G17808 NA non-coding downstream 511363 10342796 ~ 10343263 (-)
G17799 NA non-coding downstream 555969 10293586 ~ 10298657 (-)
G17796 NA non-coding downstream 584002 10269491 ~ 10270624 (-)
G17791 NA non-coding downstream 594339 10259935 ~ 10260287 (-)
G17921 NA non-coding upstream 195185 11050256 ~ 11060895 (-)
G17929 NA non-coding upstream 291334 11146405 ~ 11147408 (-)
G18085 pex12,LOC107681885,LOC107710733,LOC107587685 non-coding upstream 924961 11780032 ~ 11781320 (-)
G18087 NA non-coding upstream 931161 11786232 ~ 11786601 (-)
G18114 NA non-coding upstream 1024681 11879752 ~ 11880042 (-)
G17792 NA other downstream 607308 10246675 ~ 10247318 (-)
mak mak other downstream 845475 9995145 ~ 10009151 (-)
G17638 NA other downstream 1291901 9562427 ~ 9562725 (-)
LOC111188216 NA other downstream 1968309 8861134 ~ 8886317 (-)
LOC103026934 ahrr,LOC108431062 other downstream 2847006 7924929 ~ 8007620 (-)
LOC103047439 zswim7,LOC107665024,LOC107712139,LOC107740465,LOC107688637,LOC107731017 other upstream 160958 11016029 ~ 11080184 (-)
LOC107197924 NA other upstream 221167 11076238 ~ 11083799 (-)
abr abr,si:ch211-253h3.1,LOC107665039,LOC107712163,LOC107688618,LOC107731041,LOC103375456,LOC106567975 other upstream 230409 11085480 ~ 11334518 (-)
LOC103044489 LOC103044489,LOC108428292 other upstream 580365 11435436 ~ 11595523 (-)
G18037 NA other upstream 829916 11684987 ~ 11685391 (-)

Expression


Co-expression Network