G17913


Basic Information

Item Value
gene id G17913
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11272708 ~ 11310079 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU24172
ctcagactattttcccacacttcactcctcgcgcccgttttgtccacaagtcgcggacgagagacatctgttattttagccgtcgccattctacactcgctgctgctctgctggcttgcgcgtgaatcgattcatttgttcagaacactaagtttatctgaatcctgccacaccgactgctgcggtgtgaatcagttttcttatgaactgaatcaaatcgcgcctactaatttgactcatttgaagctagtgactgggctatatacagtatcgaaagcatcgaacgctaaagaaccgaatcgtttgtgatgacgtagtatcgaaaaagaatcgaaccttcggtacaccgtgcaactctaTGTTCTACACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24172 True 371 lncRNA 0.33 2 11272708 11310079

Neighbor

gene id symbol gene type direction distance location
LOC103044085 LOC105902693,LOC107570661 coding upstream 467010 10517421 ~ 10805698 (+)
LOC103028717 impa1,LOC103028717,LOC107085441,LOC100708678,LOC102192612,LOC102777947,LOC101479609,LOC103356684,LOC108415234 coding upstream 922660 10340494 ~ 10350048 (+)
LOC103027767 gnal,LOC108426578,LOC106590334,LOC106579638 coding upstream 1045376 10144084 ~ 10227332 (+)
sycp2l NA coding upstream 1171301 10080591 ~ 10101407 (+)
tmem14c tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 1277668 9991406 ~ 9995040 (+)
c3h11orf54 cunh11orf54,c28h11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214,LOC107685814 coding downstream 78845 11388924 ~ 11394347 (+)
spata22 NA coding downstream 86808 11396887 ~ 11401496 (+)
LOC111194924 NA coding downstream 298111 11608190 ~ 11619687 (+)
LOC103043684 snaa,napaa,LOC103043684,LOC108428316,LOC107740516,LOC107587681,LOC107681892 coding downstream 315699 11625778 ~ 11630783 (+)
LOC103041104 NA coding downstream 355075 11665154 ~ 11669150 (+)
G17907 abr non-coding upstream 29514 11205249 ~ 11243194 (+)
G17891 NA non-coding upstream 188539 11083918 ~ 11084169 (+)
G17880 NA non-coding upstream 211868 11051628 ~ 11060840 (+)
G17877 NA non-coding upstream 288042 10984455 ~ 10984666 (+)
G17862 NA non-coding upstream 314580 10891054 ~ 10958128 (+)
G17937 NA non-coding downstream 42514 11352593 ~ 11353198 (+)
G17965 NA non-coding downstream 257685 11567764 ~ 11569542 (+)
G17973 LOC103044489,LOC108428292 non-coding downstream 280225 11590304 ~ 11595495 (+)
G17979 hnrnpul1l,hnrnpul1,LOC108413504,LOC108259896,LOC105010850 non-coding downstream 345988 11656067 ~ 11659062 (+)
G18000 hnrnpul1,LOC108413504,LOC107712123,LOC107685667,LOC107595510,LOC108259896 non-coding downstream 349103 11659182 ~ 11661549 (+)
G17904 abr other upstream 82628 11177908 ~ 11190080 (+)
G17745 NA other upstream 990732 10281224 ~ 10281976 (+)
G17443 NA other upstream 2322549 8916586 ~ 8950159 (+)
LOC111191978 NA other upstream 2368704 8899940 ~ 8904004 (+)
LOC111191971 NA other upstream 2373063 8891244 ~ 8899645 (+)
G18332 LOC107710578 other downstream 1657484 12967563 ~ 12975106 (+)
G18386 gjd1a,LOC103027887,LOC108437049,LOC107700241,LOC107548473,LOC107746368 other downstream 1734752 13044831 ~ 13074453 (+)
LOC103028202 h3f3b,LOC105891059,LOC107572204,LOC105909691,LOC101073377,LOC105888650,LOC107388308 other downstream 1786631 13096710 ~ 13128508 (+)
G18413 LOC103047348,LOC108437052,LOC108260116 other downstream 1904569 13214648 ~ 13224093 (+)
G18416 LOC103046837,LOC108437054,LOC108260117,LOC107548478,LOC107700237,LOC107746364 other downstream 1923116 13233195 ~ 13237037 (+)

Expression


Co-expression Network